Jatropha Genome Database

JcCB0469081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0469081.10 + phase: 0 /pseudo/partial
         (207 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015059001 assembled CDS                                       156   6e-39
GSVIVT01015058001 assembled CDS                                       153   6e-38
GSVIVT01015060001 assembled CDS                                       151   2e-37

>GSVIVT01015059001 assembled CDS
          Length = 461

 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/104 (71%), Positives = 90/104 (86%)

Query: 102 NINLAPDGSFWIGLLQLTSDWLKFVHTSKLSKHLVASFPKLIELVTGLRKKAMVVNVAAD 161
           NINLAPDGSFWI LL+L+ + + FVHTSK SKHLVA+FPKL+ LV G++KKAMVV V AD
Sbjct: 356 NINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPKLLGLVQGMQKKAMVVKVGAD 415

Query: 162 GRIIRMFDDPVGKVMSFVTSAFEFDGYLYLGSLNTNFIGKLPLT 205
           G++++ F+DP G VMSFVT+A EF+ +LYLGSLNTNFIGKLPLT
Sbjct: 416 GKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPLT 459


>GSVIVT01015058001 assembled CDS
          Length = 382

 Score =  153 bits (386), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 86/103 (83%)

Query: 102 NINLAPDGSFWIGLLQLTSDWLKFVHTSKLSKHLVASFPKLIELVTGLRKKAMVVNVAAD 161
           N+NLAPDGSFWI L+++TSD  +FVHTSK  KHL+A+FPKL +LV G  KKA VV VAAD
Sbjct: 277 NVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHKKASVVKVAAD 336

Query: 162 GRIIRMFDDPVGKVMSFVTSAFEFDGYLYLGSLNTNFIGKLPL 204
           G+II  FDDP GKV+SFVTSA EF+ YLYLGSLNTNFIG LPL
Sbjct: 337 GKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 379


>GSVIVT01015060001 assembled CDS
          Length = 368

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 84/103 (81%)

Query: 102 NINLAPDGSFWIGLLQLTSDWLKFVHTSKLSKHLVASFPKLIELVTGLRKKAMVVNVAAD 161
           NINLAPDGSFWI L++L SD  +FVH SK  KH +A+FPKL +LV G  +KA VV VAAD
Sbjct: 263 NINLAPDGSFWIALIKLASDGFEFVHASKALKHFLATFPKLFQLVNGSNEKATVVKVAAD 322

Query: 162 GRIIRMFDDPVGKVMSFVTSAFEFDGYLYLGSLNTNFIGKLPL 204
           G+I+  FDDP GKVMSFVTSA EF+ +LYLGSLNTNFIGKLPL
Sbjct: 323 GKIVDKFDDPNGKVMSFVTSALEFEDHLYLGSLNTNFIGKLPL 365