Jatropha Genome Database

JcCB0468911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0468911.10 + phase: 0 /partial
         (328 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022158001 assembled CDS                                       619   e-178

>GSVIVT01022158001 assembled CDS
          Length = 510

 Score =  619 bits (1595), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 295/328 (89%), Positives = 312/328 (95%)

Query: 1   MFIEKFKVESPNVKYTDDEIHSVYNYETTELVYENRNGTYQWIVKPKSVKYEFRTDIHVP 60
           MFIE FKVESPNVKYT++EIHSVY+YETTELV+ENRNGTYQW+VKPK+VKYEFRTD HVP
Sbjct: 1   MFIESFKVESPNVKYTENEIHSVYDYETTELVHENRNGTYQWVVKPKTVKYEFRTDAHVP 60

Query: 61  KLGVMLVGWGGNNGSTLTAGVIANREGISWATKDKVQQANYFGSLTQASSIRVGSFNGEE 120
           KLGVMLVGWGGNNGS+LT GVIANREGISWATKDKVQ ANYFGSLTQAS+IRVGS+NGEE
Sbjct: 61  KLGVMLVGWGGNNGSSLTGGVIANREGISWATKDKVQPANYFGSLTQASTIRVGSYNGEE 120

Query: 121 IYAPFKSLLPMVNPDDIVFGGWDISDMNLADAMARAKVLDIDLQKQLRPYMESMVPLPGI 180
           IYAPFKSLLPMVNPDDIVFGGWDISDMNLADAMARAKVLDIDLQKQLRPYMESMVPLPGI
Sbjct: 121 IYAPFKSLLPMVNPDDIVFGGWDISDMNLADAMARAKVLDIDLQKQLRPYMESMVPLPGI 180

Query: 181 YDPDFIAANQGSRANNVIKGTKKEQVEQIVKDIREFKEKNNVDKVVVLWTANTERYSNVL 240
           YDPDFIAANQ SRANNVIKGTKKEQV+QI+KDIREFKE   VDKVVVLWTANTERYSN++
Sbjct: 181 YDPDFIAANQCSRANNVIKGTKKEQVQQIIKDIREFKEATKVDKVVVLWTANTERYSNLI 240

Query: 241 VGLNDTVESLLASLERNEDEISPSTLYALACVFENVPFINGSPQNTFVPGLIDLAIQRNC 300
           VGLNDT+E+LLASL+RNE EISPSTLYALACV ENVPFINGSPQNTFVPGLIDLAI+RN 
Sbjct: 241 VGLNDTIENLLASLDRNEPEISPSTLYALACVMENVPFINGSPQNTFVPGLIDLAIKRNS 300

Query: 301 LIGGDDFKSGQTKMKSVLVDFLCWGWYK 328
           LIGGDDFKSGQTKMKSVLVDFL     K
Sbjct: 301 LIGGDDFKSGQTKMKSVLVDFLVGAGIK 328