Jatropha Genome Database

JcCB0468081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0468081.10 - phase: 0 /pseudo
         (428 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021446001 assembled CDS                                       433   e-122
GSVIVT01029601001 assembled CDS                                       214   4e-56
GSVIVT01029306001 assembled CDS                                       209   3e-54
GSVIVT01018097001 assembled CDS                                       114   1e-25
GSVIVT01007818001 assembled CDS                                       108   5e-24
GSVIVT01029623001 assembled CDS                                        88   8e-18
GSVIVT01021447001 assembled CDS                                        66   3e-11

>GSVIVT01021446001 assembled CDS
          Length = 448

 Score =  433 bits (1114), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/249 (84%), Positives = 225/249 (90%)

Query: 135 MIMGADDIVSEAGSWIEKHLNDRISKKGQVNLFETTIRVLGGLLSAYHLSGGEQGTDSVH 194
           MIMGAD++V+EAGSWIE HL+ RI +KGQVNLFETTIRVLGGLLSAYHLSGGEQG +S H
Sbjct: 1   MIMGADEVVTEAGSWIETHLSHRIKEKGQVNLFETTIRVLGGLLSAYHLSGGEQGMNSTH 60

Query: 195 KGPKPIVYLETARNLADRLLLAFTSSPTPIPFSDVVLHDPSAHSSPDGLSSTSEVSTLQL 254
            GPK IVYLETA+ LAD LL AFTSSPTPIPFSDVVL D SAH +PDG SSTSEVSTLQL
Sbjct: 61  MGPKSIVYLETAKQLADLLLSAFTSSPTPIPFSDVVLRDHSAHPAPDGQSSTSEVSTLQL 120

Query: 255 EFNYLSTVSGDPKYGVEAMKVLAHMKNLPKVEGLVPIYISPASGEFSGENIRLGSRGDSY 314
           EFNYLSTVSGDPKYGVEAMKVL H+K LPKVEGLVPIYISP SGEF+GENIRLGSRGDSY
Sbjct: 121 EFNYLSTVSGDPKYGVEAMKVLEHLKTLPKVEGLVPIYISPHSGEFNGENIRLGSRGDSY 180

Query: 315 YEYLIKVWLQQGTSRDANFTYLYNMYEEAIKGVRNLLVQKSIPNGLVFVGELPNGPKGSF 374
           YEYLIKVWLQQG  RD NF YLY+MYEEA KG+R+LLVQKSIP GLVFVGELP+G KG+F
Sbjct: 181 YEYLIKVWLQQGAERDGNFKYLYDMYEEATKGIRHLLVQKSIPKGLVFVGELPSGSKGAF 240

Query: 375 SPKMDHLVC 383
           SPKMDHLVC
Sbjct: 241 SPKMDHLVC 249


>GSVIVT01029601001 assembled CDS
          Length = 575

 Score =  214 bits (546), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/308 (41%), Positives = 186/308 (60%), Gaps = 24/308 (7%)

Query: 78  DPKWTERQQKVKDAFIHAWSGYKNYAMGYDELMPLSKRGVDGLGGLGATVVDALDTAMIM 137
           DP   +R++KVKDA +HAWS Y+ YA G DEL P SK GV+  GGLGAT++D+LDT  IM
Sbjct: 97  DPIDIQRREKVKDAMLHAWSSYEKYAWGQDELQPQSKNGVNSFGGLGATLIDSLDTLYIM 156

Query: 138 GADDIVSEAGSWIEKHLNDRISKKGQVNLFETTIRVLGGLLSAYHLSGGEQGTDSVHKGP 197
           G D+    A  W+   L+   +K  + ++FETTIRV+GGLLSAY LS             
Sbjct: 157 GLDEQFQRAREWVANSLD--FNKNYEASVFETTIRVVGGLLSAYDLS------------- 201

Query: 198 KPIVYLETARNLADRLLLAFTSSPTPIPFSDVVLHDPSAHSS--PDGLSSTSEVSTLQLE 255
           +  ++LE AR++ADRLL A+ ++P+ IP++ + L   +AH+     G S  ++  T QLE
Sbjct: 202 EDKLFLEKARDIADRLLPAW-NTPSGIPYNIINLAHGNAHNPGWTGGDSILADSGTEQLE 260

Query: 256 FNYLSTVSGDPKYGVEAMKVLAHMKNLPKVEGLVPIYISPASGEFSGENIRLGSRGDSYY 315
           F  LS  +GDPKY  +   V+  +      +GL+PIYI+P  G  S   I  G+ GDS+Y
Sbjct: 261 FIALSQRTGDPKYQKKVENVIIELNKTFPADGLLPIYINPHRGTSSYSTITFGAMGDSFY 320

Query: 316 EYLIKVWLQQGTSRDANFTYLYNMYEEAIKGVRNLLVQKSIPNGLVFVGELPNGPKGSFS 375
           EYL+KVW+Q   ++ A   +   M+E ++KG+ + LV+++ P+   ++ E  NG   S  
Sbjct: 321 EYLLKVWIQ--GNKTAAVKHYREMWETSMKGLLS-LVRRTTPSSFTYICE-KNGD--SLH 374

Query: 376 PKMDHLVC 383
            KMD L C
Sbjct: 375 DKMDELAC 382


>GSVIVT01029306001 assembled CDS
          Length = 597

 Score =  209 bits (531), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 185/309 (59%), Gaps = 26/309 (8%)

Query: 78  DPKWTERQQKVKDAFIHAWSGYKNYAMGYDELMPLSKRGVDGLGGLGATVVDALDTAMIM 137
           DP    R+++VKDA IHAWS Y+ YA G DEL P +K G+D  GGLGAT+VD LDT  IM
Sbjct: 124 DPTNFRRREQVKDAMIHAWSSYEKYAWGQDELQPQTKNGIDTFGGLGATIVDCLDTLFIM 183

Query: 138 GADDIVSEAGSWIEKHLNDRISKKGQVNLFETTIRVLGGLLSAYHLSGGEQGTDSVHKGP 197
           G D+    A  W+   L+   +K  + ++FETTIRVLGGLLSAY LSG +          
Sbjct: 184 GLDEQFQRAREWVANSLD--FNKNYEASVFETTIRVLGGLLSAYDLSGDK---------- 231

Query: 198 KPIVYLETARNLADRLLLAFTSSPTPIPFSDVVLHDPSAHSS--PDGLSSTSEVSTLQLE 255
              V+LE A+++ADRLL A+ ++P+ IP++ + L   +A++     G S  ++  T QLE
Sbjct: 232 ---VFLEKAQDIADRLLPAW-NTPSGIPYNRINLAYGNANNPGWTGGNSVLADSGTEQLE 287

Query: 256 FNYLSTVSGDPKYGVEAMKVLAHMKNLPKVEGLVPIYISPASGEFSGENIRLGSRGDSYY 315
           F  LS  + DPKY  +   V+  +     ++GL+P+YI+P +G  S      G+ GDS+Y
Sbjct: 288 FIALSQRTRDPKYQKKVENVIKELGRTFPLDGLLPVYINPHTGATSSSIYTFGAMGDSFY 347

Query: 316 EYLIKVWLQQGTSRDANFTYLYNMYEEAIKGVRNLLVQKSIPNGLVFVGELPNGPKGSF- 374
           EYL+K W+ QG   +A   +   M+E +++G+++ L++++ P+   ++ E      G F 
Sbjct: 348 EYLLKAWI-QGNKTEA-VKHYREMWETSMEGLKS-LIRRTTPSSFAYICE----KNGRFL 400

Query: 375 SPKMDHLVC 383
           S KMD L C
Sbjct: 401 SDKMDELAC 409


>GSVIVT01018097001 assembled CDS
          Length = 643

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 140/299 (46%), Gaps = 54/299 (18%)

Query: 85  QQKVKDAFIHAWSGYKNYAMGYDELMPLSKRGVDGLGGLGATVVDALDTAMIMGADDIVS 144
           + +V+  F HA+ GY   A   DEL PL+  G D LGG   T++D+LDT  ++G  +  +
Sbjct: 39  RDEVRGMFYHAFDGYMENAFPLDELRPLTCEGEDTLGGYALTLIDSLDTLALLGDRERFA 98

Query: 145 EAGSWIEKHLNDRISKKGQVNLFETTIRVLGGLLSAYHLSGGEQGTDSVHKGPKPIVY-- 202
            +  WI K+L   I+K   V++FETTIR+LGGLLS  HL   +  T     G K   Y  
Sbjct: 99  TSVEWIGKNLRFDINKT--VSVFETTIRILGGLLSG-HLIASDYAT-----GMKIPSYDN 150

Query: 203 --LETARNLADRLLLAFTSSPTPIPFSDV-VLHDPSAHSSPDG----------------- 242
             L    +LA RLL AF  +PT IPF  V +LH    H S                    
Sbjct: 151 QLLHLCEDLARRLLPAF-DTPTGIPFGSVNLLHGVDEHESKAKPLSNEMEIAILSHYWIN 209

Query: 243 --------------LSSTSEVSTLQLEFNYLSTVSGDPKYGVEAMKVLAHMKNLPKVEGL 288
                         ++ST+   TL LEF  LS ++ DP +       +  +        L
Sbjct: 210 AYFCFLFVLTPSHIITSTAGGGTLTLEFGVLSRLTNDPIFEQVTKNAVHGLWARRSKLNL 269

Query: 289 VPIYISPASGEFSGENIRLGSRGDSYYEYLIKVWLQQG---------TSRDANFTYLYN 338
           V  +I+  +GE++ ++  +G+  DS+YEYL+K +L  G          +  A   YLYN
Sbjct: 270 VGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFGDEEYLFIFQEAYGAAMYYLYN 328


>GSVIVT01007818001 assembled CDS
          Length = 573

 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 146/297 (49%), Gaps = 32/297 (10%)

Query: 78  DPKWTERQQKVKDAFIHAWSGYKNYAMGYDELMPLSKRGVDGLGGLG------------- 124
           D K    ++KV+  F HA+  Y  +A  +DEL PLSK   D L  LG             
Sbjct: 29  DAKKRYMREKVRKMFYHAYDNYMAHAFPHDELKPLSKTFTDSLSELGNLNLEHLSEHYNG 88

Query: 125 --ATVVDALDTAMIMGADDIVSEAGSWIEKHLNDRISKKGQVNLFETTIRVLGGLLSAYH 182
              T++++L + +I+G +     A  W+ ++L+  +  +   NLFE  IRVLGGL+SA+ 
Sbjct: 89  SALTLIESLSSLVILGNNTEFERAVRWLSENLSFDVDVR--TNLFECNIRVLGGLVSAHI 146

Query: 183 LSGGEQGTDSVHKGPKPIVYLETARNLADRLLLAFTSSPTPIPFSDVVLHDPSAHSSPDG 242
           L+   +  + + +G      L  A +L  R L AF  +PT +P++ + L       +   
Sbjct: 147 LATDSR--NRLVQGTYKNELLILAEDLGRRFLPAF-DTPTGLPYAWINL-KYGVMENETT 202

Query: 243 LSSTSEVSTLQLEFNYLSTVSGDPKYGVEAMKVLAHMKNLPKVEGLVPIYISPASGEFSG 302
            +STS   +L LE   LS ++GDP+Y   A++ L  + ++     L+   +  A+GE+  
Sbjct: 203 ETSTSGCGSLILEMGALSRLTGDPRYESAALRALRKLWSMRSSLNLLGTTLDVATGEWIE 262

Query: 303 ENIRLGSRGDSYYEYLIKVWLQQGTSRDANFTYLYNMYEEAIKGVRNLLVQKSIPNG 359
            +  +G+  DS+YEYLIK  +  G         L+ M++ A      L VQK   +G
Sbjct: 263 YSSGIGAGVDSFYEYLIKAHILFGKEE------LWRMFQSAY-----LAVQKYFRHG 308


>GSVIVT01029623001 assembled CDS
          Length = 343

 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 8/160 (5%)

Query: 226 FSDVVLHDPSAHSS--PDGLSSTSEVSTLQLEFNYLSTVSGDPKYGVEAMKVLAHMKNLP 283
           F+  +L   +AH+     G S  ++  T QLEF  LS  +GDPKY  +   V+  +    
Sbjct: 4   FTAKILSHGNAHNPGWTGGDSILADSGTEQLEFIALSQRTGDPKYQKKVENVIIELNKTF 63

Query: 284 KVEGLVPIYISPASGEFSGENIRLGSRGDSYYEYLIKVWLQQGTSRDANFTYLYNMYEEA 343
             +GL+PIYI+P  G  S   I  G+ GDS+YEYL+KVW+Q   ++ A+  +   M+E +
Sbjct: 64  PADGLLPIYINPHRGTSSYSTITFGAMGDSFYEYLLKVWIQ--GNKTADVKHYREMWETS 121

Query: 344 IKGVRNLLVQKSIPNGLVFVGELPNGPKGSFSPKMDHLVC 383
           +KG+ + LV+++  +   ++ E  NG   S   KMD L C
Sbjct: 122 MKGLLS-LVRRTTSSSFTYICE-KNGD--SLHDKMDGLAC 157


>GSVIVT01021447001 assembled CDS
          Length = 130

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query: 1   MIFGLAYLVLTHPSTPHSFSDGLAKGI--KG--SEEDKLITDGNSRLGRFWRKXXXXXXX 56
           MI GLAYL+LT+ S+ HS S+GLAKG+  KG   E DK I DG +R  RFWRK       
Sbjct: 54  MIGGLAYLMLTNTSSGHSDSNGLAKGVIFKGGIKEGDKSIMDGGNRFRRFWRKPPRLPPR 113

Query: 57  XXXDEKVRNNKPIHE 71
              DEK  NN  IH+
Sbjct: 114 LSPDEKGSNNSFIHD 128