Jatropha Genome Database

JcCB0467871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0467871.10 - phase: 0 /partial
         (143 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033707001 assembled CDS                                       125   9e-30
GSVIVT01015850001 assembled CDS                                        66   4e-12
GSVIVT01019158001 assembled CDS                                        57   2e-09

>GSVIVT01033707001 assembled CDS
          Length = 471

 Score =  125 bits (313), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/65 (86%), Positives = 63/65 (96%)

Query: 79  IASAKLEDVSDLLGGALFLPLFKWMNEYGPIYRLAAGPRNFVVVSDPAIAKHLLKNYGKY 138
           +A+AKL+DVS+LLGGALFLPLF+WMN YGPIYRLAAGPRNFVVVSDPAIAKH+L+NYGKY
Sbjct: 1   MATAKLDDVSELLGGALFLPLFRWMNMYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGKY 60

Query: 139 GKGLV 143
            KGLV
Sbjct: 61  AKGLV 65


>GSVIVT01015850001 assembled CDS
          Length = 572

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 77  IPIASAKLEDVSDLLGGALFLPLFKWMNEYGPIYRLAAGPRNFVVVSDPAIAKHLLK-NY 135
           +P+A      VSDL G  LF  L+ W  E+G +Y+LA GP+ FVVVSDP +A+H+L+ N 
Sbjct: 76  MPVAEGA---VSDLFGRPLFFSLYDWFIEHGSVYKLAFGPKAFVVVSDPIVARHILRENI 132

Query: 136 GKYGKGLV 143
             Y KG++
Sbjct: 133 FGYDKGVL 140


>GSVIVT01019158001 assembled CDS
          Length = 638

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 39/51 (76%), Gaps = 1/51 (1%)

Query: 94  ALFLPLFKWMNEYGPIYRLAAGPRNFVVVSDPAIAKHLLKNYGK-YGKGLV 143
           A F+PL++    YG I+RL  GP++F++VSDP+IAKH+L++  K Y KG++
Sbjct: 156 AFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAKHVLRDNSKAYSKGIL 206