Jatropha Genome Database

JcCB0467821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0467821.10 - phase: 0 /partial
         (395 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026584001 assembled CDS                                       620   e-178
GSVIVT01011602001 assembled CDS                                        72   4e-13

>GSVIVT01026584001 assembled CDS
          Length = 426

 Score =  620 bits (1598), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 294/322 (91%), Positives = 306/322 (95%), Gaps = 1/322 (0%)

Query: 32  YQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSISTSNWRCTKTL 91
           YQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEES QCFLAGLVIRSLSI TSNWRC +TL
Sbjct: 88  YQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESSQCFLAGLVIRSLSIGTSNWRCAETL 147

Query: 92  GDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEDSKTDEELLQMSKSWDIVGVDLI 151
           GDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEDSKTDEELL++S SWDIVGVDLI
Sbjct: 148 GDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEDSKTDEELLKISCSWDIVGVDLI 207

Query: 152 SDVSCTSPYEWVDQTNPEWDFNS-EGSGEVYHVVAYDFGIKHNILRRLASYGCKITVVPS 210
           S VSC SPYEWVD+T  EWDFNS E +GE + V+AYDFGIKHNILRRLASYGCKITVVPS
Sbjct: 208 SGVSCNSPYEWVDKTGSEWDFNSNETAGETFRVIAYDFGIKHNILRRLASYGCKITVVPS 267

Query: 211 KWPALETLKLKPDGVLFSNGPGDPSAVPYAVQTVKELLGKVPVFGICMGHQLLGQALGGK 270
            WPA ETLK+KPDGVLFSNGPGDPSAVPYAV+TVKE+LGKVPVFGICMGHQLLGQALGGK
Sbjct: 268 TWPASETLKMKPDGVLFSNGPGDPSAVPYAVETVKEILGKVPVFGICMGHQLLGQALGGK 327

Query: 271 TFKMKFGHHGGNHPVRNVRQNRVEISAQNHNYAVDPASLPEGVEVTHINLNDGSCAGLAY 330
           TFKMKFGHHGGNHPVRN+R  RVEISAQNHNYAVDPASLPEGVEVTH+NLNDGSCAGLAY
Sbjct: 328 TFKMKFGHHGGNHPVRNLRSGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAY 387

Query: 331 PALNIMSLQYHPEASPGPHDSD 352
           PALNIMSLQYHPEASPGPHDSD
Sbjct: 388 PALNIMSLQYHPEASPGPHDSD 409


>GSVIVT01011602001 assembled CDS
          Length = 273

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 18/171 (10%)

Query: 192 HNILRRLASYGCKITVVPSKWPALETLKLK-PDGVLFSNGPGDPSAVPYAVQTVKELLGK 250
           +N+ + L   GC   V  +   ++E LK K P GVL S GPG P     ++QTV EL   
Sbjct: 77  YNLCQYLGELGCNFEVYRNDELSVEELKKKNPRGVLISPGPGTPQDSGISLQTVLELGPV 136

Query: 251 VPVFGICMGHQLLGQALGGKTF------KMKFG-HHGGNHPVRNVRQNRVEI-------- 295
           VP+FG+CMG Q +G+A GGKT       +  FG  HG + PV    +    +        
Sbjct: 137 VPLFGVCMGLQCIGEAFGGKTMFSGKIVRSPFGVMHGKSSPVYYDEKGEDGLFSGLSNPF 196

Query: 296 -SAQNHNYAVDPASLP-EGVEVTHINLNDGSCAGLAYPALNIMSLQYHPEA 344
            + + H+  ++  + P E +E+T    +    A       ++  +Q+HPE+
Sbjct: 197 TAGRYHSLVIEKDTFPNEALEITAWTEDGLIMAARHKKYKHLQGVQFHPES 247