Jatropha Genome Database

JcCB0467621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0467621.10 - phase: 1 /TE/pseudo/partial
         (119 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030703001 assembled CDS                                       119   4e-28

>GSVIVT01030703001 assembled CDS
          Length = 612

 Score =  119 bits (297), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 61/68 (89%)

Query: 32  LRKIEDGSVISNEHTSKWRIFTDNGREYFVQGKLEQAEKFFFSALEEAKKGFGDRDPHVA 91
           LR+IEDGSVISN HTSKWRIFTD GRE F+QGKLE+AE FF SAL+EAK+GFG +DPHVA
Sbjct: 105 LRRIEDGSVISNMHTSKWRIFTDQGRELFLQGKLEEAENFFLSALQEAKEGFGAKDPHVA 164

Query: 92  SACNNLGK 99
           S+CNNL +
Sbjct: 165 SSCNNLAE 172