Jatropha Genome Database

JcCB0466631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0466631.20 - phase: 1 /TE/partial
         (602 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013389001 assembled CDS                                       265   3e-71

>GSVIVT01013389001 assembled CDS
          Length = 1218

 Score =  265 bits (678), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 156/318 (49%), Positives = 199/318 (62%), Gaps = 40/318 (12%)

Query: 61   RCSET----SSQEDPEVTFVKETLSTGCNETTTTTASFSMDKSPNLNLSPPSAEFIDQVS 116
            RCS+     SS + PEV+ VKET     N T T+  SFS D++ +  +   S +  DQ  
Sbjct: 844  RCSKATSPASSHDGPEVSIVKETPGVDGNITQTSPVSFSKDENSSSTIIQASTDLPDQSL 903

Query: 117  FHSACLTNASRASDRAQCSGVATPRKDSTANNCSLIPEAESTLNLSVNSHTQKKRKSVGS 176
            FHS   TN+S    RA CS + TP +D  AN  +++PE ES LNLSVNSH QK+RKS+  
Sbjct: 904  FHSMSYTNSSGPPSRAMCSLLVTPERDFIANTSNMMPETESPLNLSVNSHAQKRRKSMIL 963

Query: 177  PLID--VKKQNDSPNAQTSGCVGFIENTIAIKDASRRIEFDFATNSAQSLSIRLKKPQIL 234
            P ++    + +D+P+A+T G +G   N++A +DA+RRIEF F                  
Sbjct: 964  PSVNPTQAEHSDAPDAKTPGHIG---NSMATRDANRRIEFGFG----------------- 1003

Query: 235  PLDNSAPPSSDPVMDKKLRISCSLCKSPLGRPENQLYVRCSLTSSSKVHLRSLVKERLER 294
                         MDK+L+I CSLC++PLG PEN LYV CSLTSSSKVHL SL++  LE 
Sbjct: 1004 -------------MDKQLQIFCSLCRNPLGLPENDLYVMCSLTSSSKVHLASLLRGSLES 1050

Query: 295  CTENTSTCIPVLMTDITSVDQRLCNSNLEDKPGRGVWCEEDGCVFSSILCPFCST-FNCL 353
               NTST IPV+++D +SV+QRLCN  L      GVWCEEDGCVF++I CPFCST  NCL
Sbjct: 1051 LAVNTSTSIPVVVSDSSSVNQRLCNKTLGGAQEHGVWCEEDGCVFNTIYCPFCSTPNNCL 1110

Query: 354  GVQIMAADASNVQLLNKV 371
            GVQIMA +ASNV LLNKV
Sbjct: 1111 GVQIMATNASNVDLLNKV 1128