Jatropha Genome Database

JcCB0465701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0465701.10 - phase: 0 /partial
         (114 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007980001 assembled CDS                                       144   6e-36
GSVIVT01020157001 assembled CDS                                        50   2e-07
GSVIVT01011867001 assembled CDS                                        47   2e-06
GSVIVT01011760001 assembled CDS                                        45   5e-06

>GSVIVT01007980001 assembled CDS
          Length = 698

 Score =  144 bits (364), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 80/96 (83%)

Query: 19  IKAYAVPFFLFAVSIFYQLVVLPRSFPPSHYDVLGIKRFSSIEEVKDAYEKLSSKWNSSA 78
           +KAY++P  L A +IF QL V+P SFP +HYDVLGIKR+S++EEV +AYEK SSKWNS  
Sbjct: 18  LKAYSIPLVLLAAAIFLQLFVIPNSFPLNHYDVLGIKRYSTVEEVAEAYEKFSSKWNSGT 77

Query: 79  EVPSAADFIEIQYAYELLKNPLWKRDYDIFGIDEQL 114
           EVP   DF++I+YA+ELL +PLWKRDYDIFGIDEQ+
Sbjct: 78  EVPETIDFLKIRYAFELLTDPLWKRDYDIFGIDEQI 113


>GSVIVT01020157001 assembled CDS
          Length = 408

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 49  YDVLGIKRFSSIEEVKDAYEKLSSKW--NSSAEVPSAAD-FIEIQYAYELLKNPLWKRDY 105
           Y+VLG+ R S+ +E+K AY K++ K+  + +A  P AAD F E+ ++Y +L +P  +R Y
Sbjct: 22  YEVLGVLRNSTDQEIKSAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQY 81

Query: 106 DIFGID 111
           D  G +
Sbjct: 82  DTAGFE 87


>GSVIVT01011867001 assembled CDS
          Length = 415

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 49  YDVLGIKRFSSIEEVKDAYEKLSSKW--NSSAEVPSAAD-FIEIQYAYELLKNPLWKRDY 105
           Y+VL + R S+ +E+K AY KL+ K+  + +A  P A++ F E+ Y+Y +L +P  +R Y
Sbjct: 18  YEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYNILSDPEKRRQY 77

Query: 106 DIFGID 111
           D  G +
Sbjct: 78  DSAGFE 83


>GSVIVT01011760001 assembled CDS
          Length = 196

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 46  PSHYDVLGIKRFSSIEEVKDAYEKLSSKWNSS--AEVPSA-----ADFIEIQYAYELLKN 98
           PS+Y VLGI+  SSIEE++ AY KL+ KW+       PS        F +IQ AY +L +
Sbjct: 36  PSYYSVLGIRTDSSIEEIRRAYRKLAMKWHPDKWTRTPSVLGEAKRKFQQIQEAYSVLSD 95

Query: 99  PLWKRDYD 106
              +  YD
Sbjct: 96  QRKRTVYD 103