Jatropha Genome Database
- JcCB0465351.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0465351.10 - phase: 0
(536 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01027802001 assembled CDS 598 e-171
GSVIVT01032651001 assembled CDS 569 e-162
GSVIVT01028733001 assembled CDS 478 e-135
GSVIVT01028732001 assembled CDS 441 e-124
GSVIVT01028321001 assembled CDS 432 e-121
GSVIVT01013421001 assembled CDS 274 8e-74
GSVIVT01027803001 assembled CDS 216 3e-56
GSVIVT01028323001 assembled CDS 112 4e-25
GSVIVT01027801001 assembled CDS 52 8e-07
>GSVIVT01027802001 assembled CDS
Length = 542
Score = 598 bits (1542), Expect = e-171, Method: Compositional matrix adjust.
Identities = 305/427 (71%), Positives = 324/427 (75%), Gaps = 59/427 (13%)
Query: 1 MAREQIGVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTDYDKE 60
MAREQ+ VL+ALD+A+TQ YHFTAIVIAGMGFFTDAYDLF ISLVTKLLGRIYY
Sbjct: 66 MAREQLQVLSALDLARTQLYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYY------ 119
Query: 61 KPGTLPPXXXXXXXXXXLCGTLAGQLFFGWLGDKLGRKKVYGITLVLMVVCSLASGLSFG 120
LFFGWLGDK+GRK VYGITL+LMVVCS+ASGLSFG
Sbjct: 120 ------------------------HLFFGWLGDKMGRKSVYGITLILMVVCSVASGLSFG 155
Query: 121 SSPKGTIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQXXXXXXXX 180
+ KG +ATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQ
Sbjct: 156 NERKGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGG 215
Query: 181 XXXXXXSTAFDHRFSAPIYEDSRRASLAPQADYVWRIILMFGAIPAALTYYWRMKMPETA 240
S AFDH F+AP YE S QADYVWRIILMFGA PAALTYYWRMKMPETA
Sbjct: 216 IVSLIVSAAFDHSFNAPSYEKDPVGSTVKQADYVWRIILMFGAAPAALTYYWRMKMPETA 275
Query: 241 RYTALVAKNAKLAASDMSKVLNVELEAEQEKVEKIVAEPSNSFGLFSKEFAKRHGRHLVG 300
RYTALVAKNA+ AA+DMSKVL V++EAE+ KVE
Sbjct: 276 RYTALVAKNARKAAADMSKVLQVDIEAEETKVEN-------------------------- 309
Query: 301 TTTTWFLLDIAFYSQNLFQKDIFTAINWIPKAQKMNAIHEVFRIARAQTLIALCSTVPGY 360
TWFLLDIAFYSQNLFQKDIF+AI WIPKA+ MNAIHEVFRIA+AQTLIALCSTVPGY
Sbjct: 310 ---TWFLLDIAFYSQNLFQKDIFSAIGWIPKAETMNAIHEVFRIAKAQTLIALCSTVPGY 366
Query: 361 WFTVFLIDYMGRFAIQLMGFFFMTVFMFAIAIPYHHWTLEPNRIGFVVMYSLTFFFANFG 420
W TV IDYMGRFAIQLMGFFFMTVFMFA+AIPYHHWTL PNRIGFVVMYSLTFFFANFG
Sbjct: 367 WCTVIFIDYMGRFAIQLMGFFFMTVFMFALAIPYHHWTLAPNRIGFVVMYSLTFFFANFG 426
Query: 421 PNATTFV 427
PNATTFV
Sbjct: 427 PNATTFV 433
>GSVIVT01032651001 assembled CDS
Length = 542
Score = 569 bits (1467), Expect = e-162, Method: Compositional matrix adjust.
Identities = 292/505 (57%), Positives = 346/505 (68%), Gaps = 18/505 (3%)
Query: 8 VLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTDYDKEKPGTLPP 67
+ +ALD AKTQ YHF AIVIAGMGFFTDAYDLFCI+ VTKL+GR+YY D K +PG LP
Sbjct: 30 IFSALDNAKTQLYHFKAIVIAGMGFFTDAYDLFCITAVTKLIGRLYYYDPIKNEPGKLPT 89
Query: 68 XXXXXXXXXXLCGTLAGQLFFGWLGDKLGRKKVYGITLVLMVVCSLASGLSFGSSPKGTI 127
LCGTLAGQLFFGWLGDKLGRK VYGITLV MV C++ASGLSFGS+ I
Sbjct: 90 NVSNAITGVALCGTLAGQLFFGWLGDKLGRKHVYGITLVTMVGCAVASGLSFGSTAHSVI 149
Query: 128 ATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQXXXXXXXXXXXXXXS 187
A+LCFFRFWLGFGIGGDYPLSA IMSEYAN+KTRGAFIAAVFAMQ S
Sbjct: 150 ASLCFFRFWLGFGIGGDYPLSAVIMSEYANQKTRGAFIAAVFAMQGIGILVAGAVSMIVS 209
Query: 188 TAFDHRFSAPIYEDSRRASLAPQADYVWRIILMFGAIPAALTYYWRMKMPETARYTALVA 247
AF + A ++ + S PQ D+VWRI+LMFGA+PA LTYYWRMKMPETAR+TALV
Sbjct: 210 KAFLVAYKAEVFSQNHVLSTQPQGDFVWRIVLMFGAVPAMLTYYWRMKMPETARFTALVK 269
Query: 248 KNAKLAASDMSKVLNVELEAEQEKVEKIVAEPSNSFGLFSKEFAKRHGRHLVGTTTTWFL 307
N + AA DM+KVL ++ E+ K KI PS S+GL S+EF KRHG L+GTT+TWFL
Sbjct: 270 GNHEKAAVDMAKVLEQDIVVEESK-PKIPVTPSPSYGLLSREFVKRHGLQLLGTTSTWFL 328
Query: 308 LDIAFYSQNLFQKDIFTAINWIPKAQKMNAIHEVFRIARAQTLIALCSTVPGYWFTVFLI 367
LDIAFYS L QKDI+ AI +PKA MNAI EV++I++A L+AL +TVPGYWFTVFLI
Sbjct: 329 LDIAFYSLQLTQKDIYPAIGLVPKASTMNAIEEVYKISKAMFLVALFATVPGYWFTVFLI 388
Query: 368 DYMGRFAIQLMGFFFMTVFMFAIAIPYHHWT--LEPNRIGFVVMYSLTFFFANFGPNATT 425
D +GRF IQL GF M++FM A P E F V+Y LT FFANFGPN+TT
Sbjct: 389 DRIGRFIIQLGGFLLMSIFM---ACPKESTNEFCEGKPYLFAVLYGLTLFFANFGPNSTT 445
Query: 426 FVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXXXXLYAAQPTDKTKTDAGYPPGIGVKNS 485
F+VPAE+FPAR RSTCH + Q + D +K +
Sbjct: 446 FIVPAELFPARFRSTCH----GISAAAGKAGAIIGAFLVQSYTQNVGD--------IKRA 493
Query: 486 LIALGVINFFGMLFTLLVPESKGKS 510
++AL ++N G + L+PE+KGKS
Sbjct: 494 IVALSMVNLIGFFLSFLIPETKGKS 518
>GSVIVT01028733001 assembled CDS
Length = 575
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 258/507 (50%), Positives = 315/507 (62%), Gaps = 74/507 (14%)
Query: 4 EQIGVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTDYDKEKPG 63
+ VL+ALD A+TQWYH TAI+IAGMGFFTDAYDLFCIS ++KLLGR+YY D
Sbjct: 3 NSLAVLHALDSARTQWYHITAIIIAGMGFFTDAYDLFCISTISKLLGRLYYYD------- 55
Query: 64 TLPPXXXXXXXXXXLCGTLAGQLFFGWLGDKLGRKKVYGITLVLMVVCSLASGLSFGSSP 123
LP L GTL GQL FGWLGDKLGRK+VYG TL+LMVVC++ SGLSFG SP
Sbjct: 56 PLPHNVNNAVVGVALFGTLTGQLVFGWLGDKLGRKRVYGFTLILMVVCAICSGLSFGYSP 115
Query: 124 KGTIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQXXXXXXXXXXX 183
K I TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQ
Sbjct: 116 KAVIITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGMGIIF----- 170
Query: 184 XXXSTAFDHRFSAPIYEDSRRASLAPQADYVWRIILMFGAIPAALTYYWRMKMPETARYT 243
D P+ R +AD++WRI+LM GA+PA LTYYWRMKMPET
Sbjct: 171 ----AGLD-----PVRSTQR------EADFLWRIVLMLGALPALLTYYWRMKMPET---- 211
Query: 244 ALVAKNAKLAASDMSKVLNVELEAEQEKVEKIVAEPSNSFGLFSKEFAKRHGRHLVGTTT 303
E +A +N + L+S+EF RHG HL+GT +
Sbjct: 212 --------------------EFKA------------ANEYSLWSREFFDRHGLHLIGTMS 239
Query: 304 TWFLLDIAFYSQNLFQKDIFTAINWIPKAQKMNAIHEVFRIARAQTLIALCSTVPGYWFT 363
TWFLLDIAFYSQNL QKDIF A+N + K +++A+ E+F +RA ++AL T PGYWFT
Sbjct: 240 TWFLLDIAFYSQNLTQKDIFPAMNLVNKDYQVSALREMFETSRAMFVVALLGTFPGYWFT 299
Query: 364 VFLIDYMGRFAIQLMGFFFMTVFMFAIAIPYHHWTLEPNRIGFVVMYSLTFFFANFGPNA 423
VF I+ +GR+ IQL+GFF M++FM I I Y + + N+ F V+Y LTFFFANFGPN+
Sbjct: 300 VFFIERIGRYIIQLVGFFMMSLFMLIIGIKYEYLR-DDNKWLFAVLYGLTFFFANFGPNS 358
Query: 424 TTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXXXXLYAAQPTDKTKTDAGYPPGIGVK 483
TTFV+PAE+FP R+RSTCH + A D + ++
Sbjct: 359 TTFVLPAELFPTRVRSTCH--AMSAAAGKAGAMIGAFVVATYTLDGKANE--------IR 408
Query: 484 NSLIALGVINFFGMLFTLLVPESKGKS 510
++I + N G T LV E+KG+S
Sbjct: 409 VAMITMACTNMLGFFCTFLVTETKGRS 435
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 65/108 (60%), Gaps = 15/108 (13%)
Query: 13 DVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTDYDKEKPGTLPPXXXXX 72
D + QWYH TAI+I MGFFTDAYDLFCIS +P
Sbjct: 443 DGVRIQWYHITAIIIC-MGFFTDAYDLFCIS--------------TAWQPTPQRQQCCCR 487
Query: 73 XXXXXLCGTLAGQLFFGWLGDKLGRKKVYGITLVLMVVCSLASGLSFG 120
L GTL GQL FGWLG+KLGRK+VYG TL+LMV+C++ SGLSFG
Sbjct: 488 AVGVALVGTLTGQLVFGWLGNKLGRKRVYGFTLILMVICAICSGLSFG 535
>GSVIVT01028732001 assembled CDS
Length = 434
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 243/507 (47%), Positives = 298/507 (58%), Gaps = 96/507 (18%)
Query: 4 EQIGVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTDYDKEKPG 63
+ + VL+ALD A+TQWYH TAIVIAGMGFFTDAYDLFCIS V+KLLGR+YY D K+KPG
Sbjct: 3 DGLAVLHALDSARTQWYHITAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPTKDKPG 62
Query: 64 TLPPXXXXXXXXXXLCGTLAGQLFFGWLGDKLGRKKVYGITLVLMVVCSLASGLSFGSSP 123
LP L GTL+GQL FGWLGDKLGRKKVYG+TL+L+
Sbjct: 63 KLPHGVNNFVIGVALVGTLSGQLVFGWLGDKLGRKKVYGMTLILI--------------- 107
Query: 124 KGTIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQXXXXXXXXXXX 183
FWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQ
Sbjct: 108 -----------FWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG-------- 148
Query: 184 XXXSTAFDHRFSAPIYEDSRRASLAPQADYVWRIILMFGAIPAALTYYWRMKMPETARYT 243
+ P E+ S P+ADY+WRI+LM GA+PA LTYYWRMKMPET RYT
Sbjct: 149 ----------ITVPFSEEP-ILSTQPEADYLWRIVLMLGALPALLTYYWRMKMPETGRYT 197
Query: 244 ALVAKNAKLAASDMSKVLNVELEAEQEKVEKIVAEPSNSFGLFSKEFAKRHGRHLVGTTT 303
AL+ NAK AA+DM +VL +E++AE +KV
Sbjct: 198 ALIEGNAKQAAADMGRVLEIEIQAEADKVA------------------------------ 227
Query: 304 TWFLLDIAFYSQNLFQKDIFTAINWIPKAQKMNAIHEVFRIARAQTLIALCSTVPGYWFT 363
QNL QKDIF A+N + K +++A+ E+F +RA ++AL T PGYWFT
Sbjct: 228 ----------DQNLTQKDIFPAMNLVKKDYEVSALREMFETSRAMFVVALLGTFPGYWFT 277
Query: 364 VFLIDYMGRFAIQLMGFFFMTVFMFAIAIPYHHWTLEPNRIGFVVMYSLTFFFANFGPNA 423
VF ID +GRF IQL+GFF M++FM I I Y + + N+ F V+Y LTFFFANFGPN+
Sbjct: 278 VFFIDRIGRFIIQLVGFFMMSLFMLIIGIKYEYLR-DDNKWLFAVLYGLTFFFANFGPNS 336
Query: 424 TTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXXXXLYAAQPTDKTKTDAGYPPGIGVK 483
TTFV+PAE+FP R+RSTCH + A D + ++
Sbjct: 337 TTFVLPAELFPTRVRSTCH--AMSAAAGKAGAMIGAFVVATYTLDGKANE--------IR 386
Query: 484 NSLIALGVINFFGMLFTLLVPESKGKS 510
++I + N G T LV E+KG+S
Sbjct: 387 IAMITMACTNMLGFFCTFLVTETKGRS 413
>GSVIVT01028321001 assembled CDS
Length = 351
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/352 (64%), Positives = 250/352 (71%), Gaps = 42/352 (11%)
Query: 159 KTRGAFIAAVFAMQXXXXXXXXXXXXXXSTAFDHRFSAPIYEDSRRASLAPQADYVWRII 218
KTRGAFIAAVFAMQ A ADYVWRII
Sbjct: 15 KTRGAFIAAVFAMQGFGILAGGL-------------------------FAIIADYVWRII 49
Query: 219 LMFGAIPAALTYYWRMKMPETARYTALVAKNAKLAASDMSKVLNVELEAEQEKVEKIVAE 278
LM GA+PAALTYY R KMPETARYTALVAKNAK AASDMSKVL V++EAE +KVE++
Sbjct: 50 LMVGALPAALTYYSRTKMPETARYTALVAKNAKKAASDMSKVLQVDIEAEPQKVEEV--- 106
Query: 279 PSNSFGLFSKEFAKRHGRHLVGTTTTWFLLDIAFYSQNLFQKDIFTAINWIPKAQKMNAI 338
+ ++GLFSKEF +RHG HL GT +TWFLLDIAFYSQNLFQKDIF+AI WIP A+ MNAI
Sbjct: 107 -TKAYGLFSKEFVRRHGVHLFGTASTWFLLDIAFYSQNLFQKDIFSAIGWIPPAKTMNAI 165
Query: 339 HEVFRIARAQTLIALCSTVPGYWFTVFLIDYMGRFAIQLMGFFFMTVFMFAIAIPYHHWT 398
EV++IA+AQTLIALCSTVPGYWFTV ID MGRFAIQLMGFFFMTVFMFA+A+PY HWT
Sbjct: 166 DEVYKIAKAQTLIALCSTVPGYWFTVAFIDRMGRFAIQLMGFFFMTVFMFALALPYDHWT 225
Query: 399 LEPNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXX 458
+ NRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPAR RSTCH
Sbjct: 226 RKDNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISAASGKAGAIVGAF 285
Query: 459 XXLYAAQPTDKTKTDAGYPPGIGVKNSLIALGVINFFGMLFTLLVPESKGKS 510
LY AQ IGVKN+L+ LG IN G +FT +VPESKGKS
Sbjct: 286 GFLYLAQ-------------SIGVKNALLVLGGINLLGFIFTFMVPESKGKS 324
>GSVIVT01013421001 assembled CDS
Length = 261
Score = 274 bits (700), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 140/254 (55%), Positives = 171/254 (67%), Gaps = 7/254 (2%)
Query: 8 VLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTDY-DKEKPGTLP 66
VL+ALD AKTQ+YHF AI+IAGMG FTDAYDLFCI + KL+GRIYY D + EK P
Sbjct: 5 VLSALDTAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLIGRIYYEDEPNLEKQYETP 64
Query: 67 PXXXXXXXXXXLCGTLAGQLFFGWLGDKLGRKKVYGITLVLMVVCSLASGLSFGSSPKGT 126
L GT+ GQL FG LGD++GR++VYG++L+LMV+ S+ G S +
Sbjct: 65 AFVVSLLVGLALLGTVIGQLVFGRLGDQIGRRRVYGLSLMLMVLSSIGCGFSICRTRNCV 124
Query: 127 IATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQXXXXXXXXXXXXXX 186
+ TL FFRF LG GIGGDYPLSATIMSE+ANKKTRG+FIAAVF+MQ
Sbjct: 125 LGTLGFFRFMLGIGIGGDYPLSATIMSEFANKKTRGSFIAAVFSMQGFGILVSSTVTMVV 184
Query: 187 STAFDHRFSAPIYEDSRRASLAPQADYVWRIILMFGAIPAALTYYWRMKMPETARYTALV 246
+ F+ +++ +AD VWR+ILMFGAIPAA+TYYWRM MPETARYTALV
Sbjct: 185 CSIFNAA------SNAQYNHTPEEADLVWRLILMFGAIPAAMTYYWRMMMPETARYTALV 238
Query: 247 AKNAKLAASDMSKV 260
+N AA DM K+
Sbjct: 239 EQNVLQAAKDMEKI 252
>GSVIVT01027803001 assembled CDS
Length = 220
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 105/139 (75%), Positives = 111/139 (79%)
Query: 372 RFAIQLMGFFFMTVFMFAIAIPYHHWTLEPNRIGFVVMYSLTFFFANFGPNATTFVVPAE 431
+FAIQLMGFFFMTVFMFA+AIPY+HWT + NRIGFVVMYSLTFFFANFGPNATTFVVPAE
Sbjct: 55 QFAIQLMGFFFMTVFMFALAIPYNHWTHKENRIGFVVMYSLTFFFANFGPNATTFVVPAE 114
Query: 432 IFPARLRSTCHXXXXXXXXXXXXXXXXXXLYAAQPTDKTKTDAGYPPGIGVKNSLIALGV 491
IFPARLRSTCH LYAAQ DK+K D GYP GIGVKNSLI LGV
Sbjct: 115 IFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDKSKVDKGYPTGIGVKNSLIVLGV 174
Query: 492 INFFGMLFTLLVPESKGKS 510
+NF GMLFT LVPESKGKS
Sbjct: 175 VNFLGMLFTFLVPESKGKS 193
>GSVIVT01028323001 assembled CDS
Length = 129
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 56/67 (83%)
Query: 1 MAREQIGVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTDYDKE 60
MAREQ+ VLNALDVAKT W HFT I+I GMGFFTDAYDLFCISLVTKLLGR+YY
Sbjct: 1 MAREQLQVLNALDVAKTLWCHFTTIIIVGMGFFTDAYDLFCISLVTKLLGRLYYHVDGAS 60
Query: 61 KPGTLPP 67
KPGTLPP
Sbjct: 61 KPGTLPP 67
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 275 IVAEPSNSFGLFSKEFAKRHGRHLVGTTTTWFLLDIAFYSQN 316
+ E + +G F KEF +RHG HL GT +TWFLLDIAFYSQN
Sbjct: 73 VNGEVAKEYGFFFKEFVRRHGVHLFGTASTWFLLDIAFYSQN 114
>GSVIVT01027801001 assembled CDS
Length = 86
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 27/49 (55%)
Query: 153 SEYANKKTRGAFIAAVFAMQXXXXXXXXXXXXXXSTAFDHRFSAPIYED 201
YANKKTRGAFIAAVFAMQ S AFDH+F AP
Sbjct: 4 KSYANKKTRGAFIAAVFAMQGFGILAGGIVSLIVSAAFDHKFKAPCLRQ 52