Jatropha Genome Database
- JcCB0465191.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0465191.10 - phase: 2 /pseudo/partial
(152 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01013474001 assembled CDS 211 1e-55
GSVIVT01022262001 assembled CDS 92 1e-19
GSVIVT01034581001 assembled CDS 88 1e-18
GSVIVT01024574001 assembled CDS 77 3e-15
GSVIVT01032677001 assembled CDS 76 6e-15
GSVIVT01025202001 assembled CDS 58 2e-09
GSVIVT01029267001 assembled CDS 49 8e-07
GSVIVT01014731001 assembled CDS 45 1e-05
>GSVIVT01013474001 assembled CDS
Length = 344
Score = 211 bits (536), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 97/118 (82%), Positives = 109/118 (92%)
Query: 34 LFIILSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTFKNIMGM 93
FI+LSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTFKNI GM
Sbjct: 226 FFILLSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTFKNISGM 285
Query: 94 VIAIAGMVVYSWAMEAEKSANAKATPHMKNSLTEEEIRLLKEGVESTPVKDIELGETK 151
++A+ GM++YSWA+E EK ANAK ++KNSLTEEEIRLLK+G+E TPVKDIELGE+K
Sbjct: 286 IVAVVGMIIYSWAVEIEKQANAKTMSNVKNSLTEEEIRLLKDGIEKTPVKDIELGESK 343
>GSVIVT01022262001 assembled CDS
Length = 335
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
Query: 34 LFIILSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSE-LTFKNIMG 92
+FIILSC++AV N+SQ++CIGRF+AVSFQV+GHMKT+ VL LG+L F E L ++G
Sbjct: 227 MFIILSCTIAVGTNLSQFICIGRFTAVSFQVIGHMKTILVLILGFLFFGKEGLNLHVVLG 286
Query: 93 MVIAIAGMVVYSWAMEAE--KSANAKATPHMKNSLTE 127
M+IA+ GM+ Y A K + A P K+ T+
Sbjct: 287 MIIAVVGMIWYGNASSKPGGKERRSPALPINKSQKTD 323
>GSVIVT01034581001 assembled CDS
Length = 335
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 10/90 (11%)
Query: 34 LFIILSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSE-LTFKNIMG 92
+FIILSC++AV N+SQ++CIGRF+AVSFQVLGHMKT+ VL +G+ F E L + ++G
Sbjct: 227 IFIILSCTIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGKEGLNLQVVLG 286
Query: 93 MVIAIAGMVVYSWAMEAEKSANAKATPHMK 122
M+IA+ GM+ Y NA + P K
Sbjct: 287 MIIAVVGMMWY---------GNASSKPGGK 307
>GSVIVT01024574001 assembled CDS
Length = 352
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 9/115 (7%)
Query: 34 LFIILSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTFKNIMGM 93
+FI+LSC ++V N S +L IG+ S V++QVLGH+KT VL G++L +++NI+G+
Sbjct: 224 VFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGI 283
Query: 94 VIAIAGMVVYSWAMEAEKSANAKATPHMKNSLTEEEIRLLKEGVESTPVKDIELG 148
+IA+ GMV+YS+ E K S ++ KE E+ P+ +E G
Sbjct: 284 LIALIGMVLYSYYCSREG--------QQKPSEVSAQMAQAKES-ETDPLIGVENG 329
>GSVIVT01032677001 assembled CDS
Length = 353
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 55/77 (71%)
Query: 34 LFIILSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTFKNIMGM 93
+FI+LSC ++V N S +L IG+ S V++QVLGH+KT VL G++L +++NI+G+
Sbjct: 224 VFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGI 283
Query: 94 VIAIAGMVVYSWAMEAE 110
+IA+ GMV+YS+ E
Sbjct: 284 LIALVGMVLYSYYCTRE 300
>GSVIVT01025202001 assembled CDS
Length = 348
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 35 FIILSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTFKNIMGMV 94
FIILSC ++V N S +L IG+ S V++QVLGH+KT VL G+ L T +NI+G++
Sbjct: 225 FIILSCIISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLGFGYTLLHDPFTERNIIGIL 284
Query: 95 IAIAGMVVYSW 105
IAI GM +YS+
Sbjct: 285 IAILGMGLYSY 295
>GSVIVT01029267001 assembled CDS
Length = 382
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%)
Query: 29 NLSLQLFIILSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTFK 88
NL+ L I++S L S L +G SA + VLG KT +L G+ LF S
Sbjct: 263 NLNNTLAILMSAVLGFLLQWSGALALGATSATTHVVLGQFKTCVILLGGFFLFGSNPGTI 322
Query: 89 NIMGMVIAIAGMVVYSWAMEAEKSANAKATPHMKNSLTEEEIRLLKEGVESTPVKDIE 146
+I G A+AGM VY++ + T +NS T + +L KE ++ ++E
Sbjct: 323 SICGATTALAGMSVYTYLNLLKPQQLPNKTSPRQNSFTLSKSKLSKENGDTHDGDNME 380
>GSVIVT01014731001 assembled CDS
Length = 383
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 36 IILSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTFKNIMGMVI 95
I++S L S L +G SA S VLG KT +L G++LF S+ F +I G V
Sbjct: 272 ILISALLGFLLQWSGALALGATSATSHVVLGQFKTCVILLGGYILFKSDPGFVSICGAVA 331
Query: 96 AIAGMVVYSW--AMEAEKSANAKATPHMKNSLTEEE 129
A+ GM VY+ + +S+ ++ P K + E+
Sbjct: 332 ALCGMSVYTSLNLRGSGESSGKQSLPSFKQKASMED 367