Jatropha Genome Database

JcCB0465031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0465031.10 - phase: 1 /pseudo/partial
         (251 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018019001 assembled CDS                                       324   2e-89
GSVIVT01001192001 assembled CDS                                       303   5e-83
GSVIVT01011899001 assembled CDS                                       227   5e-60

>GSVIVT01018019001 assembled CDS
          Length = 330

 Score =  324 bits (831), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/233 (69%), Positives = 185/233 (79%), Gaps = 7/233 (3%)

Query: 6   QVHLDYLDAGANIILTASYQATIQGFEAKGLSXXXXXXXXXXSVEIACEAREIYYDNCSK 65
           +VHLDYL+AGA+II+TASYQATIQGFEAKGLS          SVEIACEAR+IY++ C+K
Sbjct: 59  RVHLDYLEAGASIIITASYQATIQGFEAKGLSREEAEVLLRRSVEIACEARDIYHERCAK 118

Query: 66  SSWDFMESGNVTRRPILVAASIGSYGAYLADGSEYSGNYGDSVSLQTLKDFHRRRLQILA 125
            +        + +RPILVAAS+GSYGAYLADGSEYSG+YG +V+L+TLKDFHRRR+Q+LA
Sbjct: 119 GTC-------LEQRPILVAASVGSYGAYLADGSEYSGHYGAAVTLETLKDFHRRRVQVLA 171

Query: 126 KAGADIIAFETIPNXXXXXXXXXXXXXXDIKIPAWFSFNSKDGINVVSGDSISECASIAD 185
           ++GAD+IAFETIPN              +IKIPAWFSF S DGINVVSGDS+ ECASIAD
Sbjct: 172 ESGADLIAFETIPNKLEAKAYAELLDEENIKIPAWFSFTSLDGINVVSGDSLIECASIAD 231

Query: 186 SCKQLVAVGINCTPPRFIRELILSIAKVTNKPVVIYPNSGETYDAERKIWVVS 238
           SCKQ+VAVGINCTPPRFI  LIL I KVT KPVVIYPNSGETYD  RK WV S
Sbjct: 232 SCKQVVAVGINCTPPRFIHGLILLIQKVTTKPVVIYPNSGETYDGVRKEWVKS 284


>GSVIVT01001192001 assembled CDS
          Length = 328

 Score =  303 bits (776), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/230 (64%), Positives = 175/230 (76%), Gaps = 16/230 (6%)

Query: 7   VHLDYLDAGANIILTASYQATIQGFEAKGLSXXXXXXXXXXSVEIACEAREIYYDNCSKS 66
           VHLDYL+AGA+II+TASYQATIQGFEA+G S          SVEIACEAR++        
Sbjct: 60  VHLDYLEAGADIIITASYQATIQGFEARGFSRGESEALLRKSVEIACEARKMI------- 112

Query: 67  SWDFMESGNVTRRPILVAASIGSYGAYLADGSEYSGNYGDSVSLQTLKDFHRRRLQILAK 126
                    +  RPILVAAS+GSYGAYLADGSEYSG YGD ++++TLKDFHRRR+QILA 
Sbjct: 113 ---------LKHRPILVAASVGSYGAYLADGSEYSGIYGDEITVETLKDFHRRRVQILAD 163

Query: 127 AGADIIAFETIPNXXXXXXXXXXXXXXDIKIPAWFSFNSKDGINVVSGDSISECASIADS 186
           AGAD+IAFET+PN              +IKIPAWFSFNSKDG++VVSGDS+ EC SIA+S
Sbjct: 164 AGADLIAFETVPNKLEAQAYAELLEEENIKIPAWFSFNSKDGVHVVSGDSLLECVSIAES 223

Query: 187 CKQLVAVGINCTPPRFIRELILSIAKVTNKPVVIYPNSGETYDAERKIWV 236
           CK++V+VGINCTPPRFI  LILSI KVT KP++IYPNSGE+YD E+K WV
Sbjct: 224 CKKVVSVGINCTPPRFIHGLILSIKKVTTKPILIYPNSGESYDPEQKEWV 273


>GSVIVT01011899001 assembled CDS
          Length = 325

 Score =  227 bits (578), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/236 (48%), Positives = 152/236 (64%), Gaps = 7/236 (2%)

Query: 6   QVHLDYLDAGANIILTASYQATIQGFEAKGLSXXXXXXXXXXSVEIACEAREIYYDNCSK 65
           +VHL+YL+AGA+I++T+SYQATI GF +KGLS          SV +A EAR+ ++D   +
Sbjct: 55  RVHLEYLEAGADILVTSSYQATIPGFLSKGLSIEEGELLLERSVRLAVEARDKFWDVTKR 114

Query: 66  SSWDFMESGNVTRRPILVAASIGSYGAYLADGSEYSGNYGDSVSLQTLKDFHRRRLQILA 125
                   G+   R  LVAASIGSYGAYLADGSEYSG YG  ++L  LKDFHRRRLQ+L 
Sbjct: 115 VP------GHGYNR-ALVAASIGSYGAYLADGSEYSGCYGPDMNLDKLKDFHRRRLQVLV 167

Query: 126 KAGADIIAFETIPNXXXXXXXXXXXXXXDIKIPAWFSFNSKDGINVVSGDSISECASIAD 185
           ++  D++AFETIPN              +++IP+W  F+S DG N  SG+S  EC  I +
Sbjct: 168 RSCPDLLAFETIPNKLEAQACVELLEEENVQIPSWICFSSVDGENAPSGESFKECLDIIN 227

Query: 186 SCKQLVAVGINCTPPRFIRELILSIAKVTNKPVVIYPNSGETYDAERKIWVVSYIF 241
             K++ AVGINC PP F+  LI    ++T KP+V+YPNSGE +D   K W+ S  F
Sbjct: 228 KSKKVNAVGINCAPPHFLESLICKFKELTEKPIVVYPNSGEVWDGRAKRWLPSKCF 283