Jatropha Genome Database

JcCB0464111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0464111.10 - phase: 0 /partial
         (61 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016559001 assembled CDS                                        83   3e-17
GSVIVT01024952001 assembled CDS                                        83   3e-17
GSVIVT01024086001 assembled CDS                                        62   6e-11

>GSVIVT01016559001 assembled CDS
          Length = 254

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/55 (72%), Positives = 44/55 (80%)

Query: 6   PETYFCTSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKS 60
           PE       +  GSV+G NCKELAA+PDVDGFLVGGASLKPEFIDIIKSA VKK+
Sbjct: 199 PEVAATIRIIYGGSVSGANCKELAAKPDVDGFLVGGASLKPEFIDIIKSAEVKKN 253


>GSVIVT01024952001 assembled CDS
          Length = 254

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 41/49 (83%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKS 60
           T  +  GSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIKSATVKKS
Sbjct: 205 TRIIYGGSVNGANCKELTTQLDVDGFLVGGASLKPEFIDIIKSATVKKS 253


>GSVIVT01024086001 assembled CDS
          Length = 256

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 59
           T  +  GSVNG NC ELA Q D+DGFLVGGASLK PEF  I+ S T KK
Sbjct: 205 TRIIYGGSVNGSNCSELAKQEDIDGFLVGGASLKGPEFAVIVNSVTSKK 253