Jatropha Genome Database

JcCB0463991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0463991.10 - phase: 2 /pseudo/partial
         (310 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017522001 assembled CDS                                       498   e-141
GSVIVT01020266001 assembled CDS                                       478   e-135
GSVIVT01020269001 assembled CDS                                       188   2e-48
GSVIVT01021525001 assembled CDS                                       143   8e-35
GSVIVT01024609001 assembled CDS                                       133   1e-31
GSVIVT01030227001 assembled CDS                                       130   6e-31
GSVIVT01022201001 assembled CDS                                       111   4e-25
GSVIVT01015821001 assembled CDS                                       110   6e-25
GSVIVT01015824001 assembled CDS                                       104   5e-23
GSVIVT01008589001 assembled CDS                                        87   9e-18
GSVIVT01029151001 assembled CDS                                        69   2e-12

>GSVIVT01017522001 assembled CDS
          Length = 364

 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/281 (84%), Positives = 263/281 (93%)

Query: 19  SFADRVFFTNSGTEANEAAIKFARKFQRVSHPDEKQPPTEFISFTNSFHGRTMGAVALTS 78
           SFADRVFF+NSGTEANEAAIKFARKFQR  HPD+KQ  TEFISF+NSFHGRTMG++ALTS
Sbjct: 51  SFADRVFFSNSGTEANEAAIKFARKFQRFLHPDQKQLATEFISFSNSFHGRTMGSLALTS 110

Query: 79  KEHYRSPFEPVMPGVTFLEYGNIEAARELIKSGKIAAVFIEPIQGEGGIYSATKEFLQSL 138
           KE+YRSPFEPVMPGVTFLEYGNI AARELI+SGKIAAVF+EPIQGEGGIYSATKEFLQSL
Sbjct: 111 KEYYRSPFEPVMPGVTFLEYGNIHAARELIQSGKIAAVFVEPIQGEGGIYSATKEFLQSL 170

Query: 139 RSACDDAGSLLVFDEVQCGLGRTGCLWAHEAYSVVPDIMTIAKPLAGGLPIGAALMSERV 198
           RSACDDAGSLLVFDEVQCGLGRTG LWAHE+Y + PDIMT+AKPLAGGLPIGA L++ERV
Sbjct: 171 RSACDDAGSLLVFDEVQCGLGRTGYLWAHESYGIFPDIMTLAKPLAGGLPIGAVLVTERV 230

Query: 199 AAAMKYGEHGSTFAGGPLVCNAAIAVLDKISGPGFLAKVAKKGQYFKEILIQKLGGNSHV 258
           A+A+KYG+HGSTFAGGPLVC AA+AVLDKIS P FL  V+KKGQYFKE+L+QKLGGN HV
Sbjct: 231 ASAIKYGDHGSTFAGGPLVCKAAVAVLDKISKPTFLDSVSKKGQYFKELLMQKLGGNPHV 290

Query: 259 KEVRGMGLILGIELDVSASPLVDASRNSGLLILTAGKGTLL 299
           +EVRG+GLI+GIELDV ASPLVDA RNSGLLILTAGKG ++
Sbjct: 291 REVRGLGLIVGIELDVPASPLVDACRNSGLLILTAGKGNVI 331


>GSVIVT01020266001 assembled CDS
          Length = 467

 Score =  478 bits (1231), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/281 (80%), Positives = 255/281 (90%)

Query: 19  SFADRVFFTNSGTEANEAAIKFARKFQRVSHPDEKQPPTEFISFTNSFHGRTMGAVALTS 78
           SF+DRVFF+NSGTEANEAAIKFARKFQR SHPD K+PPT+FI+FTNSFHGRTMGA+ALTS
Sbjct: 154 SFSDRVFFSNSGTEANEAAIKFARKFQRHSHPDAKEPPTDFIAFTNSFHGRTMGALALTS 213

Query: 79  KEHYRSPFEPVMPGVTFLEYGNIEAARELIKSGKIAAVFIEPIQGEGGIYSATKEFLQSL 138
           KEHYRSPFEPVMPGVTF+EYGNIEA +ELI+ GK AAVF+EPIQGEGGIYSATKEFLQ L
Sbjct: 214 KEHYRSPFEPVMPGVTFVEYGNIEATKELIQKGKTAAVFVEPIQGEGGIYSATKEFLQFL 273

Query: 139 RSACDDAGSLLVFDEVQCGLGRTGCLWAHEAYSVVPDIMTIAKPLAGGLPIGAALMSERV 198
           RSACDDAG LLVFDEVQCGLGRTG LWAHE+Y V PDIMT+AKPLAGGLPIGA L++ERV
Sbjct: 274 RSACDDAGVLLVFDEVQCGLGRTGHLWAHESYGVFPDIMTLAKPLAGGLPIGAVLVTERV 333

Query: 199 AAAMKYGEHGSTFAGGPLVCNAAIAVLDKISGPGFLAKVAKKGQYFKEILIQKLGGNSHV 258
           A+A+ +G+HGSTFAG PLVCNAA+AVL+KIS P FLA VAKKGQY K+IL QKLG N HV
Sbjct: 334 ASAINFGDHGSTFAGSPLVCNAALAVLEKISEPSFLASVAKKGQYLKQILTQKLGHNPHV 393

Query: 259 KEVRGMGLILGIELDVSASPLVDASRNSGLLILTAGKGTLL 299
           KEVRG GLI+GIELDV ASPLV A + +GLL+LT+GKG ++
Sbjct: 394 KEVRGFGLIVGIELDVQASPLVVACQEAGLLVLTSGKGNVV 434


>GSVIVT01020269001 assembled CDS
          Length = 148

 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 101/110 (91%)

Query: 118 IEPIQGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGCLWAHEAYSVVPDIM 177
           +E IQGEGGIYSATKEFLQ LRSACDDAG+LLVFDEVQCGLGRTG LWAHE+Y V PDIM
Sbjct: 12  VERIQGEGGIYSATKEFLQFLRSACDDAGALLVFDEVQCGLGRTGHLWAHESYGVFPDIM 71

Query: 178 TIAKPLAGGLPIGAALMSERVAAAMKYGEHGSTFAGGPLVCNAAIAVLDK 227
           T+AKPLAGGLPIGA L++E+VA+A+ +G+HGSTFAG PLVCNAA+AVL K
Sbjct: 72  TLAKPLAGGLPIGAVLVTEQVASAVNFGDHGSTFAGSPLVCNAALAVLKK 121


>GSVIVT01021525001 assembled CDS
          Length = 466

 Score =  143 bits (361), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 144/270 (53%), Gaps = 15/270 (5%)

Query: 11  LRNVLRYSSFADRVFFTNSGTEANEAAIKFARKFQRVSHPDEKQPPTE--FISFTNSFHG 68
           L+N+  Y    D V   N+G E  E A+K ARK+    +  +K P  +   +S    FHG
Sbjct: 117 LKNMFGY----DMVLPMNTGAEGVETALKLARKW---GYEKKKIPKDQAIIVSCCGCFHG 169

Query: 69  RTMGAVALTSKEHYRSPFEPVMPGVTFLEYGNIEAARELIKSG--KIAAVFIEPIQGEGG 126
           RT+  ++++        F P++PG   +++G+  A  ++ +    +IA    EPIQGE G
Sbjct: 170 RTLAVISMSCDNEATRGFGPLLPGHLKVDFGDEVALEKIFEENGDRIAGFLFEPIQGEAG 229

Query: 127 IYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGCLWAHEAYSVVPDIMTIAKPLAGG 186
           +      +L+++R  C     L++ DE+Q GLGR+G + A +   V PD++ + K L GG
Sbjct: 230 VIIPPDGYLKAVRELCSKFNILMIADEIQSGLGRSGRMLACDWAEVRPDVVILGKALGGG 289

Query: 187 -LPIGAALMSERVAAAMKYGEHGSTFAGGPLVCNAAIAVLDKISGPGFLAKVAKKGQYFK 245
            + + A L  + V  +++ GEHGSTF G PL    A+A LD I+  G   +  + GQ  +
Sbjct: 290 VIAVSAVLADKDVMLSIQPGEHGSTFGGNPLASAVAVASLDVITEEGLSERSDQMGQELR 349

Query: 246 EIL--IQKLGGNSHVKEVRGMGLILGIELD 273
             L  I +L  N  +KEVRG GL   +EL+
Sbjct: 350 NQLMKIHQLFPNL-IKEVRGKGLFNAVELN 378


>GSVIVT01024609001 assembled CDS
          Length = 436

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 142/304 (46%), Gaps = 41/304 (13%)

Query: 24  VFFTNSGTEANEAAIKFARKFQRVSHPDEKQPPTEFISFTNSFHGRTMGAVALTSKEHYR 83
           VFFTNSGTEANE A+  AR +             + IS  N++HG     ++ T++ +Y+
Sbjct: 117 VFFTNSGTEANELAMMIARLYTGFH---------DIISLRNAYHGNAAATMSATAQCNYK 167

Query: 84  SPFEPVMPGVTF---------------LEYG-NIEAARELIKSGKIAAVFIEPIQGEGGI 127
             F  V  GV                 L+Y  +++   +    G +A    E IQG GGI
Sbjct: 168 --FNVVQTGVHHALNPDQYRGVFGSDGLKYAKDVQDLIDYGTCGNVAGFLAEAIQGVGGI 225

Query: 128 YSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGC-LWAHEAYSVVPDIMTIAKPLAGG 186
                 +L ++      AG L + DEVQ G  RTG   W  EA+ VVPDI+T+AK +  G
Sbjct: 226 LELAPGYLAAVYGTIKKAGGLCIADEVQSGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG 285

Query: 187 LPIGAALMSERVAAAMKYGEHGSTFAGGPLVCNAAIAVLDKISGPGFLAKVAKKGQYFKE 246
           +PIGA + +  +A  + Y  + +TF G P+   + +AVL  I            G Y K+
Sbjct: 286 VPIGAVVTTPEIAKVLTYRTYFNTFGGNPVSTASGLAVLRVIEKEKLQENAHVVGSYLKD 345

Query: 247 ILIQKLGGNSHVKEVRGMGLILGIEL----------DVSASPLVDASRNSGLLILTAGKG 296
            L      +  + +VRG GL+LG+EL           V    ++D  +  G+LI   GKG
Sbjct: 346 RLTSLKEKHEIIGDVRGRGLMLGVELVTDRQLKTPAKVETLHVMDKMKEMGVLI---GKG 402

Query: 297 TLLG 300
              G
Sbjct: 403 GFYG 406


>GSVIVT01030227001 assembled CDS
          Length = 436

 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 142/304 (46%), Gaps = 41/304 (13%)

Query: 24  VFFTNSGTEANEAAIKFARKFQRVSHPDEKQPPTEFISFTNSFHGRTMGAVALTSKEHYR 83
           VFFTNSGTEANE A+  AR +   +         + IS  N++HG   G +  T++  ++
Sbjct: 117 VFFTNSGTEANELAMMMARLYTGCN---------DIISLRNAYHGNAAGTMGATAQRVWK 167

Query: 84  SPFEPVMPGV-----------TFLEYGNIEA--ARELIK---SGKIAAVFIEPIQGEGGI 127
             F  V  GV            F   G   A   ++LI    SG +A    E IQG GGI
Sbjct: 168 --FNVVQTGVHHALNPDPYRGMFGSDGEKYARDVQDLIDFGTSGHVAGFISEAIQGVGGI 225

Query: 128 YSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGC-LWAHEAYSVVPDIMTIAKPLAGG 186
                 +L ++ S+   AG L + DEVQ G  RTG   W  E+  VVPDI+T+AK +  G
Sbjct: 226 VELAPGYLPAVYSSVKKAGGLFIADEVQSGFARTGSHFWGFESQGVVPDIVTMAKGIGNG 285

Query: 187 LPIGAALMSERVAAAMKYGEHGSTFAGGPLVCNAAIAVLDKISGPGFLAKVAKKGQYFKE 246
           +P+GA + +  +A  +    + +TF G P+   A  AVL  I            G Y KE
Sbjct: 286 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTTAGHAVLKVIEKEKLQENAYVVGSYLKE 345

Query: 247 ILIQKLGGNSHVKEVRGMGLILGIEL----------DVSASPLVDASRNSGLLILTAGKG 296
            L+        + +VRG GL+LG+E           +V    ++D  +  G+L+   GKG
Sbjct: 346 RLLSLKDKYEIIGDVRGRGLMLGVEFVTDRKLKTPANVEILHIMDQMKEMGVLV---GKG 402

Query: 297 TLLG 300
              G
Sbjct: 403 GFYG 406


>GSVIVT01022201001 assembled CDS
          Length = 472

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 134/302 (44%), Gaps = 37/302 (12%)

Query: 24  VFFTNSGTEANEAAIKFARKFQRVSHPDEKQPPTEFISFTNSFHGRTMGAVALTSKE--H 81
           V+F NSG+EANE A+  AR +               IS  N++HG + G + LT+     
Sbjct: 153 VYFVNSGSEANELAMLMARLYS---------GNLGMISLRNAYHGGSSGTIGLTALNTWK 203

Query: 82  YRSPFEPVMPGVTFLEYGNI------EAARELIK------SGKIAAVFIEPIQGEGGIYS 129
           Y  P   +   V    Y  I        AR+L        SGK+A    E IQG GG   
Sbjct: 204 YSIPEGEIHHVVNPDPYRGIFGSDASSYARDLKDHIDYGTSGKVAGFISETIQGVGGAVE 263

Query: 130 ATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGC-LWAHEAYSVVPDIMTIAKPLAGGLP 188
               +L+ +      AG + + DEVQ G GRTG   W  E   V+PDI+T+AK +  GLP
Sbjct: 264 LAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLP 323

Query: 189 IGAALMSERVAAAMKYGEHGSTFAGGPLVCNAAIAVLDKISGPGFLAKVAKKGQYFKEIL 248
           +GA + +  +A  +      +TF G P+     +AVL  +         A  G +  E L
Sbjct: 324 LGAVVTTPEIADVLAQKIQFNTFGGNPVCSAGGLAVLRVLDKEKRQEHCADVGSHLIERL 383

Query: 249 IQKLGGNSHVKEVRGMGLILGIEL----------DVSASPLVDASRNSGLLILTAGKGTL 298
                 +  + +VRG GL++G+EL              + L +  R  G+LI   GKG L
Sbjct: 384 RALQQKHDIIGDVRGRGLMVGVELVTDRKEKTPAKAETAVLFENLREIGILI---GKGGL 440

Query: 299 LG 300
            G
Sbjct: 441 HG 442


>GSVIVT01015821001 assembled CDS
          Length = 493

 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 45/291 (15%)

Query: 23  RVFFTNSGTEANEAAIKFARKFQR-VSHPDEKQPPTEFISFTNSFHGRTMGAVAL----- 76
           +VFFT+SG+EAN+  +K    +   +  P++K+    FI+   S+HG T  + +L     
Sbjct: 134 KVFFTSSGSEANDTQVKLVWYYNNALGRPNKKK----FIALEKSYHGTTFISASLSGLPV 189

Query: 77  --------------TSKEHYRSPFEPVMPGVTFLEY-----GNIEAARELIKSG--KIAA 115
                         T   HY   +   +PG T  E+      N+E  + ++K G   IAA
Sbjct: 190 LHQGFDLPSPFVFHTDCPHY---WRFHLPGETEEEFSTRLANNLE--KLILKQGPETIAA 244

Query: 116 VFIEPIQGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGCLWAHEAYSVVPD 175
              EP+ G GG+      + + +++       L + DEV C  GR G ++  + Y + PD
Sbjct: 245 FIAEPLMGAGGVIPPPTTYYEKIQAILKKYDILFIADEVICAFGRLGAMFGCDKYGIKPD 304

Query: 176 IMTIAKPLAGG-LPIGAALMSERVAAAM-----KYGE--HGSTFAGGPLVCNAAIAVLDK 227
           +++IAK  + G +PIGA L+S  ++  +     K G   HG TF+G P+ C  A+ VL  
Sbjct: 305 LVSIAKAFSSGYMPIGAVLVSPEISEVIHSHSNKLGSFAHGFTFSGHPVSCAVALEVLKI 364

Query: 228 ISGPGFLAKVAKKGQYFKEILIQKLGGNSHVKEVRGMGLILGIELDVSASP 278
                 + +V      F++  I+    +  + E+RG GL++GIE   + SP
Sbjct: 365 YRERNIIEQVQSLSPRFQD-GIRAFSDSPIIGEIRGTGLLIGIEFTDNKSP 414


>GSVIVT01015824001 assembled CDS
          Length = 522

 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 39/288 (13%)

Query: 23  RVFFTNSGTEANEAAIKFARKFQR-VSHPDEKQPPTEFISFTNSFHGRTM------GAVA 75
           + FFTNSG+EAN+  +K    +   +  P++K+    FI+   S+HG T+      G  A
Sbjct: 165 KAFFTNSGSEANDTQVKLVWYYNNALGRPNKKK----FIAREKSYHGSTLISASLSGLPA 220

Query: 76  LTSKEHYRSPF----------EPVMPGVTFLEY-----GNIEAARELIKSG--KIAAVFI 118
           L  K    +PF             +PG +  E+      N+E    ++K G   IAA   
Sbjct: 221 LHQKFDLPAPFVLHTDCPHYWRYHLPGESEEEFSTRLANNLENL--ILKEGPETIAAFIA 278

Query: 119 EPIQGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGCLWAHEAYSVVPDIMT 178
           EP+ G GG+      +   ++        L + DEV C  GR G ++  + Y + PD+++
Sbjct: 279 EPVMGAGGVIPPPATYFDKIQPILKKYDILFIADEVICAFGRLGTMFGCDKYGMKPDLVS 338

Query: 179 IAKPLAGG-LPIGAALMSERVAAAM-----KYG--EHGSTFAGGPLVCNAAIAVLDKISG 230
           +AK L+   +PIGA L+S  ++  +     K G   HG T++G P+ C  A+  L KI  
Sbjct: 339 MAKALSSAYMPIGAVLVSPEISDVIDSQSNKLGVFSHGFTYSGHPVSCAVALEAL-KIYK 397

Query: 231 PGFLAKVAKKGQYFKEILIQKLGGNSHVKEVRGMGLILGIELDVSASP 278
              +A+V ++     +  ++    +  + E+RG GLILG E   + SP
Sbjct: 398 ERNIAEVVQRISPKFQNGLKAFSDSPIIGEIRGTGLILGTEFTDNKSP 445


>GSVIVT01008589001 assembled CDS
          Length = 401

 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 112/243 (46%), Gaps = 29/243 (11%)

Query: 22  DRVFFTNSGTEANEAAIKFARKFQRVSHPDEKQPPTEFISFTNSFHGRT--MGAVALTSK 79
           + V F NSGTEA    ++ AR F       EK      I F   +HG        A +  
Sbjct: 120 EMVRFVNSGTEACMGMLRLARAFTG----KEK-----IIKFEGCYHGHADPFLVKAGSGV 170

Query: 80  EHYRSPFEPVMPGVTFLE-----YGNIEAARELIKS--GKIAAVFIEPIQGEGGIYSATK 132
                P  P +P     E     + ++    +L ++  G+IAAV +EP+ G  G  +   
Sbjct: 171 ATLGLPDSPGVPRAATFETLTSPFNDLSTVEKLFEANKGEIAAVILEPVVGNSGFIAPKP 230

Query: 133 EFLQSLRSACDDAGSLLVFDEVQCGLGRTGCLWAHEAYSVVPDIMTIAKPLAGGLPIGA- 191
           +FL +L+    + G+LLVFDEV  G  R     A E + + PDI T+ K + GGLP+GA 
Sbjct: 231 DFLNALQEITKENGALLVFDEVMTGF-RISYGGAQEYFGITPDITTLGKIIGGGLPVGAY 289

Query: 192 ---ALMSERVAAAMKYGEHGSTFAGGPLVCNAAIAVLDKISGPG---FLAKVAKKGQYFK 245
                + E VA A    + G T +G PL   A I  L ++  PG   +L K+   G+  +
Sbjct: 290 GGRREIMELVAPAGPMYQAG-TLSGNPLAMTAGIQTLKRLKEPGSYEYLDKIT--GELIQ 346

Query: 246 EIL 248
            IL
Sbjct: 347 GIL 349


>GSVIVT01029151001 assembled CDS
          Length = 863

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 12/179 (6%)

Query: 111 GKIAAVFIEPI-QGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGCLWAHEA 169
           G I A+ IEP+  G GG++     F + L + C      ++FDEV  G  R G   A E 
Sbjct: 625 GHIGALIIEPVVHGSGGMHMIDPLFQRVLVNECRSRKIPVIFDEVFTGFWRLGAESASEL 684

Query: 170 YSVVPDIMTIAKPLAGG-LPIGAALMSERVAAA------MKYGEHGSTFAGGPLVCNAAI 222
               PDI   AK + GG +P+ A L ++ V  A      +K   HG ++    + C AA+
Sbjct: 685 LCCQPDIACFAKLMTGGIIPLAATLATDAVFNAFAGDSKLKALLHGHSYTAHAMGCTAAV 744

Query: 223 AVLDKISGPGFLAKVAKKGQYFKEI----LIQKLGGNSHVKEVRGMGLILGIELDVSAS 277
             +     P   + +  +G+  +E+    L+ ++  +  V+ V  +G +  +EL    S
Sbjct: 745 KSIKWFKDPQTNSNITSEGRLLRELWDAELVHQISSHPAVQRVVALGTLFALELQAEGS 803