Jatropha Genome Database

JcCB0463411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0463411.10 - phase: 2 /pseudo/partial
         (86 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017289001 assembled CDS                                        90   2e-19
GSVIVT01015516001 assembled CDS                                        90   2e-19
GSVIVT01018897001 assembled CDS                                        89   6e-19
GSVIVT01035831001 assembled CDS                                        84   1e-17
GSVIVT01018123001 assembled CDS                                        77   1e-15

>GSVIVT01017289001 assembled CDS
          Length = 129

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 44/49 (89%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRR 79
          KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILK  G  + +
Sbjct: 28 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEK 76


>GSVIVT01015516001 assembled CDS
          Length = 130

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 44/49 (89%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRR 79
          KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILK  G  + +
Sbjct: 28 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEK 76


>GSVIVT01018897001 assembled CDS
          Length = 211

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 48/56 (85%)

Query: 31  KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRRVRLLSFS 86
           KKPLFFYVNLAKR+MQQHNEVELSALGMAIATVVTIAEILK  G ++ +  + S S
Sbjct: 101 KKPLFFYVNLAKRHMQQHNEVELSALGMAIATVVTIAEILKNNGLVVEKKIMTSTS 156


>GSVIVT01035831001 assembled CDS
          Length = 130

 Score = 84.0 bits (206), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 44/49 (89%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRR 79
          KKPLFFYVNLAKR+MQQ+N+VELSALGMAIATVVTIAEILK  G  + +
Sbjct: 29 KKPLFFYVNLAKRFMQQYNDVELSALGMAIATVVTIAEILKNNGLAVEK 77


>GSVIVT01018123001 assembled CDS
          Length = 131

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 45/54 (83%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRRVRLLS 84
          KKPLFFY+NLAKRY++Q+N+VELSALGMAI +VVTIAEILK  G   ++  L S
Sbjct: 24 KKPLFFYINLAKRYIKQYNDVELSALGMAIPSVVTIAEILKKNGVATQKKILTS 77