Jatropha Genome Database

JcCB0462781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0462781.10 - phase: 0 /partial
         (119 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032914001 assembled CDS                                        92   7e-20
GSVIVT01008110001 assembled CDS                                        70   2e-13

>GSVIVT01032914001 assembled CDS
          Length = 913

 Score = 91.7 bits (226), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 54/83 (65%), Gaps = 6/83 (7%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAIGQNRKSLPSSGQSGNDS 60
          M AK +H L DENPDLQKQIGCMNGI QLFDRHHFL GGRR  G   K LP  GQ     
Sbjct: 1  MSAKLLHTLSDENPDLQKQIGCMNGIFQLFDRHHFL-GGRRINGHTHKRLP-PGQ----G 54

Query: 61 KEQKNAAQNTTEKNQKKAIKEKQ 83
           E  NA     +KN KK +KEKQ
Sbjct: 55 MEPNNAPHKAKDKNPKKFVKEKQ 77


>GSVIVT01008110001 assembled CDS
          Length = 875

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 10/88 (11%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAIGQNRKSLPSSGQSGNDS 60
          M AK +H+L D+NPDLQKQIGCM GI QLFD HH L G R +   +++ LP  G S  +S
Sbjct: 1  MAAKLLHSLTDDNPDLQKQIGCMAGIFQLFDHHHILTGRRIS---HKRLLP--GNSYLNS 55

Query: 61 KEQKNAA-----QNTTEKNQKKAIKEKQ 83
            + N+           KN  K++ EKQ
Sbjct: 56 SLETNSTNVGHRHTAAGKNSNKSVNEKQ 83