Jatropha Genome Database

JcCB0461591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0461591.10 + phase: 2 /partial
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032644001 assembled CDS                                        86   3e-18
GSVIVT01025087001 assembled CDS                                        55   5e-09

>GSVIVT01032644001 assembled CDS
          Length = 769

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/103 (49%), Positives = 59/103 (57%)

Query: 1   HCGSSNMLGGPVEGNGGNYXXXXXXXXXXXXXXXXXXXXTAVNAGGTNMESDNGIAGKTX 60
            CGSSN+L  PVEG   N+                    TAVNA GTNMESD+GIAGK  
Sbjct: 633 QCGSSNVLNAPVEGYACNHSLNGSASGSNHGSNGQNGSTTAVNAQGTNMESDDGIAGKGG 692

Query: 61  XXXXXXXXXXXXNRIDQNKFSQREAALTKFRQKRKERCFRKKV 103
                       + +DQN+++QREAAL KFRQKRKERCF KKV
Sbjct: 693 AGGGSGSGSGSRSGVDQNQYAQREAALNKFRQKRKERCFEKKV 735


>GSVIVT01025087001 assembled CDS
          Length = 103

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 30/31 (96%)

Query: 73  NRIDQNKFSQREAALTKFRQKRKERCFRKKV 103
           NR+++++F+QREAALTKFRQKRKERCF KKV
Sbjct: 23  NRVEEDRFAQREAALTKFRQKRKERCFEKKV 53