Jatropha Genome Database

JcCB0461271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0461271.10 + phase: 0 /partial
         (136 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010628001 assembled CDS                                       150   2e-37

>GSVIVT01010628001 assembled CDS
          Length = 380

 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 92/137 (67%), Gaps = 3/137 (2%)

Query: 1   METLIKSTFPYFSKYRNIPNIKSVKPLKFS--IKPPPPDFDFRSEILQQSRTTIAKSYPQ 58
           METL  STFP F+   N    K  KP K S  IKPPPPDFDFR++IL+ SR TIA+++PQ
Sbjct: 1   METL-ASTFPIFTANPNFHTTKPSKPSKVSVSIKPPPPDFDFRAQILEDSRATIAQTHPQ 59

Query: 59  LLDLADTGNLVVIEKQLFGPVPAWRTEFVEPDAIWLVGTTHICXXXXXXXXXXXXXXXXX 118
           LLDLAD G+LVVIEK+LFGPVPAWRTEFVEP+ IWL+GTTHI                  
Sbjct: 60  LLDLADNGSLVVIEKRLFGPVPAWRTEFVEPEEIWLLGTTHISSFSAADVERVVEVVNPD 119

Query: 119 XXXXELCKSRQISSSLF 135
               ELC+SRQ+ + + 
Sbjct: 120 NVVVELCRSRQVLAGIM 136