Jatropha Genome Database

JcCB0461221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0461221.10 + phase: 2 /partial
         (270 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013403001 assembled CDS                                       356   7e-99
GSVIVT01001128001 assembled CDS                                       308   2e-84
GSVIVT01036751001 assembled CDS                                       231   2e-61
GSVIVT01007521001 assembled CDS                                       226   7e-60
GSVIVT01032942001 assembled CDS                                       224   2e-59
GSVIVT01010328001 assembled CDS                                       220   5e-58
GSVIVT01001842001 assembled CDS                                       216   7e-57

>GSVIVT01013403001 assembled CDS
          Length = 453

 Score =  356 bits (913), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 186/272 (68%), Positives = 205/272 (75%), Gaps = 3/272 (1%)

Query: 1   ISVDGKVIKVVSDRNPVNLPWGGVGIDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGK 60
           ISVDGK IKVVS R+P+ LPW  +GID+VIEGTGVFVD  GAGKHIQAGAKKV+ITAP K
Sbjct: 152 ISVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK 211

Query: 61  G-DIPTYVVGVNADAY-NPAEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTG 118
           G DIPTYVVGVN   Y +    I+SNASCTTNCLAPFVK+LD++ GI+KGTMTTTHSYTG
Sbjct: 212 GADIPTYVVGVNEGDYSHEVSNIVSNASCTTNCLAPFVKILDEELGIVKGTMTTTHSYTG 271

Query: 119 DQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNXXXXX 178
           DQ                  NIVPTSTGAAKAV+LVLP LKGKLNGIALRVPTPN     
Sbjct: 272 DQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVD 331

Query: 179 XXXXXSKKTF-AEEVNAAFRESADKELKGILSVCDEPLVSVDFRCXXXXXXXXXXLTMVM 237
                 KK   AE+VNAAFR++AD  LKGIL+VCD PLVSVDF+C          LTMVM
Sbjct: 332 LVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFKCSDVSSTIDASLTMVM 391

Query: 238 GDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 269
           GDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct: 392 GDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKW 423


>GSVIVT01001128001 assembled CDS
          Length = 331

 Score =  308 bits (789), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/237 (70%), Positives = 175/237 (73%), Gaps = 15/237 (6%)

Query: 35  VFVDRDGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYNPAEPIISNASCTTNCLAP 94
           VFVDR+GAGKHI+AGAKKVLITAPGK DIPTYVVGVNA+ YNPAEPIISNASCTTNCLAP
Sbjct: 109 VFVDREGAGKHIEAGAKKVLITAPGKADIPTYVVGVNAETYNPAEPIISNASCTTNCLAP 168

Query: 95  FVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVALV 154
           FVK+LDQKFGIIKGTMTTTHSYTGDQ                  NIVPTSTGAAKAVALV
Sbjct: 169 FVKILDQKFGIIKGTMTTTHSYTGDQRLFDASHRVLRPVRAAVLNIVPTSTGAAKAVALV 228

Query: 155 LPTLKGKLNGIALRVPTPNXXXXXXXXXXSK-KTFAEEVNAAFRESADKELKGILSVCDE 213
           LP LKGKLNGIALRVPT N          +  +TFAEEVNAAFR SA+KEL GI S+CDE
Sbjct: 229 LPNLKGKLNGIALRVPTSNVSVVDLVVLVNDGETFAEEVNAAFRNSAEKELNGIPSMCDE 288

Query: 214 PLVSVDFRCXXXXXXXXXXLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 270
           PLVSVDFRC          LTMVMGDDMVK              VVDLADIVANN K
Sbjct: 289 PLVSVDFRCSDVSSTVDSSLTMVMGDDMVK--------------VVDLADIVANNCK 331


>GSVIVT01036751001 assembled CDS
          Length = 429

 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/267 (45%), Positives = 160/267 (59%), Gaps = 2/267 (0%)

Query: 1   ISVDGKVIKVVSDRNPVNLPWGGVGIDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGK 60
           + ++GK IKV S R+P  +PWG  GID V+E +GVF   + A  HI+ GAKKV+I+AP  
Sbjct: 158 LEINGKQIKVTSKRDPSEIPWGDYGIDYVVESSGVFTTTEKASAHIKGGAKKVVISAPS- 216

Query: 61  GDIPTYVVGVNADAYNPAEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ 120
            D P +VVGVN  +Y P+  I+SNASCTTNCLAP  KV+ ++FGI++G MTT H+ T  Q
Sbjct: 217 ADAPMFVVGVNETSYKPSMNIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQ 276

Query: 121 XXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNXXXXXX 179
                              NI+P+STGAAKAV  VLP L GKL G+A RVPTPN      
Sbjct: 277 KTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDL 336

Query: 180 XXXXSKKTFAEEVNAAFRESADKELKGILSVCDEPLVSVDFRCXXXXXXXXXXLTMVMGD 239
                K    E+V AA + +++  LKGIL   DE +VS DF              + +  
Sbjct: 337 TCRLKKSATYEDVKAAVKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSA 396

Query: 240 DMVKVIAWYDNEWGYSQRVVDLADIVA 266
             +K++AWYDNEWGYS RV+DL + +A
Sbjct: 397 SFMKLVAWYDNEWGYSNRVLDLIEHMA 423


>GSVIVT01007521001 assembled CDS
          Length = 343

 Score =  226 bits (577), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 116/257 (45%), Positives = 153/257 (59%), Gaps = 2/257 (0%)

Query: 6   KVIKVVSDRNPVNLPWGGVGIDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGKGDIPT 65
           K + V   RNP  +PWG  G + V+E TGVF D+D A  H++ GAKKV+I+AP K D P 
Sbjct: 80  KPVTVFGIRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPM 138

Query: 66  YVVGVNADAYNPAEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXX 125
           +VVGVN   Y P   I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q     
Sbjct: 139 FVVGVNEKEYKPELHIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDG 198

Query: 126 XXXXX-XXXXXXXXNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNXXXXXXXXXXS 184
                         NI+P+STGAAKAV  VLP+L GKL G+A RVPT +           
Sbjct: 199 PSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTVDVSVVDLTVRLE 258

Query: 185 KKTFAEEVNAAFRESADKELKGILSVCDEPLVSVDFRCXXXXXXXXXXLTMVMGDDMVKV 244
           K    E+V AA +E ++ ++KGIL   ++ +VS DF              + + +  +K+
Sbjct: 259 KAATYEQVKAAIKEESEGKMKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNEKFLKI 318

Query: 245 IAWYDNEWGYSQRVVDL 261
           +AWYDNEWGYS RV+DL
Sbjct: 319 VAWYDNEWGYSSRVIDL 335


>GSVIVT01032942001 assembled CDS
          Length = 289

 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/120 (90%), Positives = 113/120 (94%)

Query: 1   ISVDGKVIKVVSDRNPVNLPWGGVGIDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGK 60
           ISVDGKVIK+VS RNP++LPWG + IDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGK
Sbjct: 135 ISVDGKVIKIVSSRNPLDLPWGDLDIDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGK 194

Query: 61  GDIPTYVVGVNADAYNPAEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ 120
           GDIPTYVVGVNAD YN  E IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ
Sbjct: 195 GDIPTYVVGVNADEYNHDESIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ 254


>GSVIVT01010328001 assembled CDS
          Length = 380

 Score =  220 bits (561), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 151/257 (58%), Gaps = 2/257 (0%)

Query: 6   KVIKVVSDRNPVNLPWGGVGIDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGKGDIPT 65
           K + V   RNP  +PW   G D V+E TGVF D+D A  H++ GAKKV+I+AP K D P 
Sbjct: 118 KSVTVFGVRNPEEIPWAETGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPM 176

Query: 66  YVVGVNADAYNPAEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXX 125
           +V+GVN   Y P   I+SNASCTTNCLAP  KV++ +FGI++G MTT H+ T  Q     
Sbjct: 177 FVMGVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDG 236

Query: 126 XXXXX-XXXXXXXXNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNXXXXXXXXXXS 184
                         NI+P+STGAAKAV  VLP L GKL G++ RVPT +           
Sbjct: 237 PSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLE 296

Query: 185 KKTFAEEVNAAFRESADKELKGILSVCDEPLVSVDFRCXXXXXXXXXXLTMVMGDDMVKV 244
           K    +EV AA +E ++ +LKGIL   ++ +VS DF              + +  + +K+
Sbjct: 297 KSATYDEVKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNANFLKL 356

Query: 245 IAWYDNEWGYSQRVVDL 261
           ++WYDNEWGYS RV+DL
Sbjct: 357 VSWYDNEWGYSSRVIDL 373


>GSVIVT01001842001 assembled CDS
          Length = 337

 Score =  216 bits (551), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/257 (43%), Positives = 149/257 (57%), Gaps = 2/257 (0%)

Query: 6   KVIKVVSDRNPVNLPWGGVGIDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGKGDIPT 65
           K + V   +NP  +PWG  G + V+E TGVF D+D A  H++ GAKKV+I+AP   + P 
Sbjct: 74  KAVTVFGAKNPEEIPWGEAGAEYVVESTGVFTDKDKAALHLKGGAKKVIISAPS-SNAPM 132

Query: 66  YVVGVNADAYNPAEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXX 125
           +V+GVN   Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT HS T  Q     
Sbjct: 133 FVMGVNEKEYKSNIDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDG 192

Query: 126 XXXXX-XXXXXXXXNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNXXXXXXXXXXS 184
                         NI+P+STGAAKAV  VLP L GKL G+A RVPT +           
Sbjct: 193 PSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTADVSVVDLTVRTE 252

Query: 185 KKTFAEEVNAAFRESADKELKGILSVCDEPLVSVDFRCXXXXXXXXXXLTMVMGDDMVKV 244
           KK   +++ AA +  ++  LKGIL   ++ +VS DF              + + ++ +K+
Sbjct: 253 KKASYDDIKAAIKAESEGNLKGILGYTEDEVVSSDFLGDSRSSIFDAKAGIALNENFIKL 312

Query: 245 IAWYDNEWGYSQRVVDL 261
           ++WYDNEWGYS RVVDL
Sbjct: 313 VSWYDNEWGYSSRVVDL 329