Jatropha Genome Database

JcCB0460891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0460891.10 - phase: 0 
         (121 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036171001 assembled CDS                                        96   3e-21
GSVIVT01036173001 assembled CDS                                        57   3e-09

>GSVIVT01036171001 assembled CDS
          Length = 490

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 51/65 (78%), Gaps = 2/65 (3%)

Query: 13  HTNEPSD--NAMGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSF 70
           H N+P +    +GSSV+NPVRYSNLQDFGL YFT+NPWI KD K VKVGKV VL  M+SF
Sbjct: 325 HANQPCEVIYQVGSSVKNPVRYSNLQDFGLRYFTKNPWINKDGKAVKVGKVTVLSTMDSF 384

Query: 71  PRYMA 75
            RYMA
Sbjct: 385 HRYMA 389


>GSVIVT01036173001 assembled CDS
          Length = 490

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 13  HTNEPSD--NAMGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSF 70
           H N+P +    +GSS++NP++  +L DF   YF  NPWI KD K VKV K+ +      F
Sbjct: 325 HANQPCEIIYQVGSSLKNPLKLLDLHDFFFKYFHENPWINKDGKAVKVSKLILFSTTFVF 384

Query: 71  PRYMA 75
             Y+A
Sbjct: 385 HGYLA 389