Jatropha Genome Database

JcCB0459841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0459841.20 + phase: 0 /partial
         (106 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032991001 assembled CDS                                       119   3e-28
GSVIVT01021980001 assembled CDS                                        68   1e-12
GSVIVT01028708001 assembled CDS                                        56   3e-09
GSVIVT01017824001 assembled CDS                                        52   4e-08

>GSVIVT01032991001 assembled CDS
          Length = 766

 Score =  119 bits (297), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 75/106 (70%)

Query: 1   MDHRILKVPQEVEIAKEKIISIDYVGARKKLLEIQFHFPAFDNISGMITVCDILNSAGYR 60
           MD  + K  +E+E+ K  I + DY+GAR KL E++ HFPA D ISGMITVCDIL+SAGY 
Sbjct: 1   MDDIMGKALKEIEVVKMMIANEDYMGARTKLHELRHHFPALDGISGMITVCDILSSAGYG 60

Query: 61  FLGSNTNYYWVLEVCPDATEFAMKTQYNKFLTLLEPIKNNFPKAAS 106
           FLG  TN+YWVL++   A E  ++ Q++KF  LL+PIK +FP   S
Sbjct: 61  FLGCGTNWYWVLQIMRAAGEADIRYQFHKFKRLLDPIKTSFPGTES 106


>GSVIVT01021980001 assembled CDS
          Length = 804

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%)

Query: 14  IAKEKIISIDYVGARKKLLEIQFHFPAFDNISGMITVCDILNSAGYRFLGSNTNYYWVLE 73
           I+++K+ S D++GAR+     Q  FP  +NIS ++TVCD+  SA  +  G+  ++Y +L+
Sbjct: 14  ISEKKMQSGDFIGARRIAQRAQQLFPDLENISQLLTVCDVHCSAQNKIYGTEMDWYGILK 73

Query: 74  VCPDATEFAMKTQYNKFLTLLEPIKNNFPKA 104
           V   A +  +K QY K   LL P KN F  A
Sbjct: 74  VEQAADDAIIKKQYRKLALLLHPDKNKFAGA 104


>GSVIVT01028708001 assembled CDS
          Length = 585

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 13 EIAKEKIISIDYVGARKKLLEIQFHFPAFDNISGMITVCDILNSAGYRFLGSNTNYYWVL 72
          +IA  K    D++GA+K +L+ Q  +P  + +S M+T+ D+  SA  +  G   ++Y +L
Sbjct: 13 DIAVRKFREKDFLGAKKFVLKAQNLYPGLEGLSQMLTILDVYISAEKKVSGE-VDWYGIL 71

Query: 73 EVCPDATEFAMKTQYNKFLTLLEPIKN 99
           V P A E  +K QY K   +L P KN
Sbjct: 72 GVSPLADEETVKKQYRKLALILHPDKN 98


>GSVIVT01017824001 assembled CDS
          Length = 716

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 40/56 (71%)

Query: 14 IAKEKIISIDYVGARKKLLEIQFHFPAFDNISGMITVCDILNSAGYRFLGSNTNYY 69
          +A++K+ + D+VGARK  ++ Q  +P  +NIS M+TVCD+  SA ++ +G+  ++Y
Sbjct: 14 LAEKKMQNKDFVGARKIAIKAQQLYPDLENISQMLTVCDVHCSAEHKLIGNEIDWY 69