Jatropha Genome Database

JcCB0459841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0459841.10 - phase: 0 
         (182 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032992001 assembled CDS                                       216   4e-57
GSVIVT01008625001 assembled CDS                                       101   2e-22

>GSVIVT01032992001 assembled CDS
          Length = 478

 Score =  216 bits (551), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/151 (66%), Positives = 118/151 (78%), Gaps = 1/151 (0%)

Query: 1   MRPYKNSNNSRRPAAVLHLLCVAAFFSIIVFAIQSSFFAGNRNSDLNKEEIHTLSEFQFS 60
           + P    +++R    + HL+C A FFS+ VF IQSS FAG+R    N   I  LS+FQ S
Sbjct: 4   LHPSSRPSSNRMRFTLFHLICAAVFFSLFVFGIQSSLFAGSRRIS-NNINIQILSDFQSS 62

Query: 61  VQQCVANRGLGLTAHIVDHCKLTLKFPEGTNSTWYNAQFKIYEPLEYHYDVCDAILLWEQ 120
           VQQC+ANRG G+TAHI+DHCKL LKFPEGTNSTW+N QFK +E LEY YDVC+ ILLWEQ
Sbjct: 63  VQQCMANRGFGITAHIIDHCKLILKFPEGTNSTWFNTQFKKFEALEYSYDVCETILLWEQ 122

Query: 121 YRNMTTVLTREYLDARPDGWLDYAAKRIAQL 151
           YRN+TTVLTREYLD RPDGWL+YAAKRIAQL
Sbjct: 123 YRNITTVLTREYLDVRPDGWLNYAAKRIAQL 153


>GSVIVT01008625001 assembled CDS
          Length = 439

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 2/131 (1%)

Query: 19  LLCVAAFFSIIVFAIQSSFFAGNRNSDLNKEEIHTLSEFQFSVQQCVANRGLGL-TAHIV 77
           +L +A+ F+ I+  I +        S L+ E++  L   Q   Q+CV++ GLGL  A   
Sbjct: 9   ILALASGFAAIIIYI-NGLANIYEKSLLSDEDLGALESLQSGFQKCVSSNGLGLQAARGR 67

Query: 78  DHCKLTLKFPEGTNSTWYNAQFKIYEPLEYHYDVCDAILLWEQYRNMTTVLTREYLDARP 137
           D+C++T+KFP  T   W + +    E L + +++C+A+  WEQ RN TT+LT+E++DA P
Sbjct: 68  DYCQVTIKFPSDTVPKWKDPKTGELEGLSFDFNLCEAVATWEQVRNSTTILTKEFIDALP 127

Query: 138 DGWLDYAAKRI 148
           +GW DYA +RI
Sbjct: 128 NGWTDYAWRRI 138