Jatropha Genome Database

JcCB0459051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0459051.10 + phase: 0 
         (178 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024250001 assembled CDS                                       206   4e-54
GSVIVT01034360001 assembled CDS                                       194   2e-50
GSVIVT01033018001 assembled CDS                                        91   3e-19

>GSVIVT01024250001 assembled CDS
          Length = 426

 Score =  206 bits (524), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/174 (58%), Positives = 125/174 (71%), Gaps = 1/174 (0%)

Query: 1   MGCLSSTQRDSGGNGKWPRNVGEVALFVPGMRIPKPVDFTQPLGDGLSRNLIERLSALRT 60
           MGC  ST  D+GGN + P N+GEV++F+PG RIPKP+DF++ LGD LS+NL+ERL+ALRT
Sbjct: 1   MGCFVSTPTDTGGNRRRPGNIGEVSVFIPGFRIPKPLDFSKSLGDHLSKNLLERLTALRT 60

Query: 61  RIVVMAGQEX-XXXXXXXXXXXQHGGSTMLDLQQALEDYLPVLLGLVENGNQLQQELQFS 119
           RIVVMAG E             QHGGST+ DL QALEDYLPVLLGLV++G+QLQ ++QF 
Sbjct: 61  RIVVMAGHEAPTITRTRRKTATQHGGSTLADLLQALEDYLPVLLGLVKDGSQLQHKVQFV 120

Query: 120 WLNQEDTAEETTMSNFWYELLSVLHXXXXXXXXXXXXXXXXITSNDGHLSKLSE 173
           W+NQED AEETTMSN WYE+LSVLH                 TS+DG+  K+SE
Sbjct: 121 WVNQEDDAEETTMSNAWYEVLSVLHLMAMLLLSQANLLLLPRTSSDGYQPKVSE 174


>GSVIVT01034360001 assembled CDS
          Length = 419

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/173 (56%), Positives = 116/173 (67%)

Query: 1   MGCLSSTQRDSGGNGKWPRNVGEVALFVPGMRIPKPVDFTQPLGDGLSRNLIERLSALRT 60
           MGC+ ST  DS    +  RNVGE+ +FVPG+R PK +DF+  LGDGLSR+L+ERLSALRT
Sbjct: 1   MGCMLSTLNDSREKRRRSRNVGEIVVFVPGLRTPKAMDFSGQLGDGLSRSLVERLSALRT 60

Query: 61  RIVVMAGQEXXXXXXXXXXXXQHGGSTMLDLQQALEDYLPVLLGLVENGNQLQQELQFSW 120
           RIVVMAG+E            +HGGS M DLQQALEDYLPVLLGL +N +QLQ +LQF W
Sbjct: 61  RIVVMAGEEGLVPAKSRRVATRHGGSAMADLQQALEDYLPVLLGLAQNAHQLQHKLQFDW 120

Query: 121 LNQEDTAEETTMSNFWYELLSVLHXXXXXXXXXXXXXXXXITSNDGHLSKLSE 173
           +NQED  EET MSN WYE+LSVLH                 T  DG+ S +SE
Sbjct: 121 INQEDDTEETAMSNCWYEVLSVLHLMAMLSLLQANLLLLPKTPADGYQSTVSE 173


>GSVIVT01033018001 assembled CDS
          Length = 419

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 15/145 (10%)

Query: 1   MGCLSSTQR-DSGGNGKWPRNVGEVALFVPGMRIPKPVDFTQPLGDGLSRNLIERLSALR 59
           MGC +S  +  + G  K   ++ E  +FVP MR+P   D  + L   + R++ ++LS+LR
Sbjct: 1   MGCTTSISKIYTVGRRKKTISIPETVVFVPSMRVPVRSDLQRTLRGLIPRDVADKLSSLR 60

Query: 60  TRIVVMAGQEXXXXXXXXXXXXQHGGSTMLDLQQALEDYLPVLLGLVENGNQLQQELQFS 119
            +IV++A               + GGS + +L + LE+YL VLLGL +N   L++ ++F 
Sbjct: 61  NQIVLVA--------------EETGGSAVTELMRILEEYLSVLLGLTKNEYGLEELVEFK 106

Query: 120 WLNQEDTAEETTMSNFWYELLSVLH 144
           W N E   +ET ++N W+ELLS++H
Sbjct: 107 WKNLEGGLQETNVANSWFELLSIVH 131