Jatropha Genome Database

JcCB0458961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0458961.10 + phase: 0 /pseudo/partial
         (252 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016597001 assembled CDS                                       197   3e-51

>GSVIVT01016597001 assembled CDS
          Length = 899

 Score =  197 bits (502), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/111 (82%), Positives = 100/111 (90%), Gaps = 3/111 (2%)

Query: 135 QPLLITSMSCGASLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHADLEEGI 194
           +PL++ S     +LLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDH+ LEEGI
Sbjct: 751 KPLIVMSPK---NLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHSSLEEGI 807

Query: 195 RRLVLCSGKVYYELDEERKKTGAKDVAICRVEQLCPFPYDLIQRELKRYPS 245
           RRL+LCSGKVYYELDE+RKK  A DVAICRVEQLCPFPYDL QRELKRYP+
Sbjct: 808 RRLILCSGKVYYELDEQRKKVKANDVAICRVEQLCPFPYDLAQRELKRYPN 858



 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 24/29 (82%), Positives = 28/29 (96%)

Query: 1   VHDQENGEKYCPLDHVVMNQDEEMFTVSN 29
           +HDQE GE+YCPLDHV+MNQ+EEMFTVSN
Sbjct: 590 IHDQETGERYCPLDHVIMNQNEEMFTVSN 618