Jatropha Genome Database

JcCB0458291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0458291.10 + phase: 1 /partial
         (160 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000122001 assembled CDS                                       196   4e-51
GSVIVT01011346001 assembled CDS                                       146   5e-36
GSVIVT01029194001 assembled CDS                                       127   2e-30
GSVIVT01008059001 assembled CDS                                       113   3e-26
GSVIVT01020070001 assembled CDS                                        86   6e-18
GSVIVT01009346001 assembled CDS                                        85   1e-17

>GSVIVT01000122001 assembled CDS
          Length = 276

 Score =  196 bits (498), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 93/148 (62%), Positives = 113/148 (76%)

Query: 13  VDFSATIGTPTIAFGAETSYATASGEFSKYNAGVSYTSPDTNASVILADKGNSIKVSYLR 72
           VD S TIGTP+IAFGAE  Y T SG F+KY AG+S   PD+ AS+IL DKG++I+ SY+ 
Sbjct: 129 VDLSVTIGTPSIAFGAEAGYDTTSGCFTKYTAGISVAKPDSCASIILGDKGDTIRASYVH 188

Query: 73  HLEMMNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHGSLGALVQHEFKPK 132
           HL+ + +   VGEI+R FS N+NT TVG SY  DP T +K KLNNHG+LGAL+QHE  PK
Sbjct: 189 HLDSLKKSAAVGEISRRFSTNDNTFTVGGSYAIDPLTNVKAKLNNHGNLGALLQHEIIPK 248

Query: 133 SFLTISGSFDTKALHKNPKFGLALSLKP 160
           S LT+SG FDTKAL K P+FGLAL+LKP
Sbjct: 249 SILTLSGEFDTKALDKTPRFGLALALKP 276


>GSVIVT01011346001 assembled CDS
          Length = 276

 Score =  146 bits (368), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 99/149 (66%)

Query: 12  IVDFSATIGTPTIAFGAETSYATASGEFSKYNAGVSYTSPDTNASVILADKGNSIKVSYL 71
           IV+FS TIGT  +A G + S+ T SG F+K NAGVS+ + D  AS+ + DKG+++  SY 
Sbjct: 128 IVNFSGTIGTNVVALGTDLSFDTKSGNFTKCNAGVSFCNADLIASLTVNDKGDAVNASYF 187

Query: 72  RHLEMMNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHGSLGALVQHEFKP 131
             + ++    V  E+  +FS N+NTLT+G  +  DP T +K ++NN G   AL+QHE++P
Sbjct: 188 HSVNLLTNTAVGAEVTHSFSTNQNTLTLGAQHKLDPLTTVKARVNNFGKASALIQHEWRP 247

Query: 132 KSFLTISGSFDTKALHKNPKFGLALSLKP 160
           +S  TISG  DTKA+ K  K GLAL+LKP
Sbjct: 248 RSLFTISGEVDTKAVDKTAKVGLALALKP 276


>GSVIVT01029194001 assembled CDS
          Length = 277

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 12  IVDFSATIGTPTIAFGAETSYATASGEFSKYNAGVSYTSPDTNASVILADKGNSIKVSYL 71
           +++ SA IG+  ++ G E    TAS  F+KYNAG+    PD + +V+L DKG ++K SY+
Sbjct: 128 LLELSAAIGSKDLSLGGEVGLNTASASFTKYNAGIGINKPDFSVAVLLTDKGETLKASYI 187

Query: 72  RHLEM-MNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHGSLGALVQHEFK 130
             +       TV  E+   F+  EN+ T+G ++V DP T++KT+L+N+G    L Q E++
Sbjct: 188 HSVNPPYGGTTVAAELTHKFNTYENSFTIGSAHVVDPYTMVKTRLSNNGKFAMLCQREWR 247

Query: 131 PKSFLTISGSFDTKALHKNPKFGLALSLKP 160
           PKS +T+SG +D KA +   K GLAL+LKP
Sbjct: 248 PKSLITVSGEYDPKANNGATKLGLALALKP 277


>GSVIVT01008059001 assembled CDS
          Length = 258

 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 95/159 (59%), Gaps = 2/159 (1%)

Query: 2   LRGITNHTDLIVDFSATIGTPTIAFGAETSYATASGEFSKYNAGVSYTSPDTNASVILAD 61
           + G+T  T+ ++ FS  IG+  ++ G + ++ T    F+K NAG+S++SP  +AS+ L D
Sbjct: 102 IEGMT--TNPVMSFSGVIGSSVVSLGTDLAFDTILKNFTKCNAGLSFSSPIVSASLTLED 159

Query: 62  KGNSIKVSYLRHLEMMNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHGSL 121
           KG++ K S    +  +    +  E+  TFS NE +LT+G  +   P TV+K + +  G +
Sbjct: 160 KGDTAKASCFGLINPLTSTAIAAELKHTFSQNETSLTLGAQHEVAPLTVIKARADTTGKV 219

Query: 122 GALVQHEFKPKSFLTISGSFDTKALHKNPKFGLALSLKP 160
           GAL QH+   K FLT++G  D + L  +P  GL+L+L+P
Sbjct: 220 GALFQHQLVSKIFLTLAGDVDIQELKTSPTIGLSLALRP 258


>GSVIVT01020070001 assembled CDS
          Length = 240

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 68/110 (61%)

Query: 12  IVDFSATIGTPTIAFGAETSYATASGEFSKYNAGVSYTSPDTNASVILADKGNSIKVSYL 71
           IV+FS  +G  T++ G + S+ TA+G F+K NAG+ +++ D  A++ L DKG+++  SY 
Sbjct: 128 IVNFSGVVGNNTLSLGTDLSFDTATGNFTKCNAGLGFSNADLIAALTLNDKGDTLNASYY 187

Query: 72  RHLEMMNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHGSL 121
             +  +    V  E++  FS NENTLT+G  +  DP T +K + NN G +
Sbjct: 188 HTVSPLTNTAVGAELSHCFSTNENTLTIGTQHALDPLTKVKARANNSGKV 237


>GSVIVT01009346001 assembled CDS
          Length = 84

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 55/83 (66%)

Query: 77  MNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHGSLGALVQHEFKPKSFLT 136
           M +  V GE+ R  +  E+ LT+GC+Y  +P T++K ++N +G  GA ++ E +P +F T
Sbjct: 1   MKKGAVAGEVKRRIATKESKLTIGCAYAINPHTLVKARMNQYGYFGAALKQEVQPNTFFT 60

Query: 137 ISGSFDTKALHKNPKFGLALSLK 159
           ISG+F+ +AL K P+ G+AL  K
Sbjct: 61  ISGTFELQALRKTPRIGVALEHK 83