Jatropha Genome Database

JcCB0457001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0457001.10 + phase: 0 /partial
         (185 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023275001 assembled CDS                                       322   9e-89

>GSVIVT01023275001 assembled CDS
          Length = 376

 Score =  322 bits (824), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 158/170 (92%), Positives = 166/170 (97%)

Query: 16  MGIADAILDLVSSGTTLKENNLKEIEGGVVLESQAVLVASRKSLMQRKGALDTIHEILER 75
           MGIADAILDLVSSGTTL+ENNLKEIEGGVVLESQAVLVASRKSL+QRKG LDT HEILER
Sbjct: 207 MGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIQRKGVLDTTHEILER 266

Query: 76  LEAHLRAVGQFTVTANMRGSSAEEVAERVLSQPSLSGLQGPTVSPVFCKRDGKVSPDYYA 135
           LEAHLRAV QFTVTANMRGSSAEEVAERVL+QPSLSGLQGPTVSPVFCKRDG+V+ DYYA
Sbjct: 267 LEAHLRAVDQFTVTANMRGSSAEEVAERVLTQPSLSGLQGPTVSPVFCKRDGRVAADYYA 326

Query: 136 IVICVPKKALYKSVQQLRAIGGSGVLISPLTYIFEEETPRWRQLLSKLGL 185
           IVICVPKKALYKSVQQLRAIGGSGVLISPLTYIF+EETPRWR+LLS+LGL
Sbjct: 327 IVICVPKKALYKSVQQLRAIGGSGVLISPLTYIFDEETPRWRELLSELGL 376