Jatropha Genome Database

JcCB0456881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456881.10 - phase: 0 /partial
         (148 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027627001 assembled CDS                                       241   8e-65

>GSVIVT01027627001 assembled CDS
          Length = 365

 Score =  241 bits (615), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 117/148 (79%), Positives = 140/148 (94%)

Query: 1   LAGVKECMGNDRVEQYTEKGIVVWSGNDDECHDARWSHGATGVISVASNLVPGLMRKLMI 60
           LAGVKEC+GNDR++QYT+  IVVWSGNDD+CHDA+W +GATGVISV SNL+PGLMR+L+ 
Sbjct: 218 LAGVKECVGNDRIKQYTDNRIVVWSGNDDQCHDAKWDYGATGVISVTSNLIPGLMRQLLF 277

Query: 61  EGKDPALNSKLLPLIRWLFQEPNPIGLNTALAQLGVVRPVFRLPYVPLPLPKRVEFVNLV 120
           +GK+P+LN+K++PL+ WLF+EPNPIGLNTALAQLGVVRPVFRLPYVPLPL KRVEFVN+V
Sbjct: 278 KGKNPSLNAKIMPLVNWLFEEPNPIGLNTALAQLGVVRPVFRLPYVPLPLAKRVEFVNIV 337

Query: 121 KAIGRENFVGEQDVQVLEDDDFMLVGRY 148
           K IGRENFVGE+DV+VL+DDDF+LVGRY
Sbjct: 338 KEIGRENFVGEKDVKVLDDDDFILVGRY 365