Jatropha Genome Database

JcCB0456651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456651.10 - phase: 2 /partial
         (176 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033273001 assembled CDS                                       176   7e-45

>GSVIVT01033273001 assembled CDS
          Length = 430

 Score =  176 bits (445), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 105/177 (59%), Gaps = 1/177 (0%)

Query: 1   SRWDSSFSRMPGSEYFSSINYGAADDPASESDYVGSLCFERKIDLTSYIKWWGSNKTRQX 60
           +RWD  F R+ G EYF++++YG  DD A+ES+  G  C ERKIDLT YIKWWG NKTRQ 
Sbjct: 180 NRWDQPFGRIAGQEYFNNMHYGMGDDAAAESELFGGFCMERKIDLTGYIKWWGPNKTRQS 239

Query: 61  XXXXXXXXXXXHGYAEDVGGELKTSEWAVQPTEPYQMPCLGMPIDGKKHXXXXXXXXXXX 120
                       G  ED+G ELKT EWA+QPTEPYQMP LG+P +GKK            
Sbjct: 240 DSLAKSSEETKQGSGEDIGSELKTLEWAIQPTEPYQMPRLGLPHEGKKQKSSTVSALSIL 299

Query: 121 XXXXXXXXXQERASKKQXXXXXXXXXXXXXX-XKMDYGKAVEKSTSHDNSNERLGVA 176
                    +E+ASKKQ                KMD+GKAVEKSTSHD+ +ERLGVA
Sbjct: 300 SRSAAYKSLEEKASKKQENNTENDENENKNKINKMDHGKAVEKSTSHDSGSERLGVA 356