Jatropha Genome Database

JcCB0456051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456051.10 - phase: 1 /pseudo/partial
         (223 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024167001 assembled CDS                                       174   3e-44

>GSVIVT01024167001 assembled CDS
          Length = 455

 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/99 (85%), Positives = 92/99 (92%)

Query: 98  MSKKLSIRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEGAGMLDCLQL 157
           +S+KLS+ PVIGVRAKLRTKH+GHFGSTSGEKGKFGLTT QILRVV+KLE AGMLD LQL
Sbjct: 101 LSQKLSVHPVIGVRAKLRTKHAGHFGSTSGEKGKFGLTTIQILRVVRKLEQAGMLDSLQL 160

Query: 158 LHFHIGSQIPSTALLADGVGEAAQIYCELVRLGAQMQVL 196
           LHFHIGSQIPST LLADGV EAAQIYCELVRLGA M+V+
Sbjct: 161 LHFHIGSQIPSTDLLADGVSEAAQIYCELVRLGAHMRVI 199