Jatropha Genome Database
- JcCB0456011.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0456011.10 + phase: 2 /pseudo/partial
(429 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01035022001 assembled CDS 219 3e-57
GSVIVT01031225001 assembled CDS 213 2e-55
GSVIVT01017638001 assembled CDS 190 1e-48
GSVIVT01029079001 assembled CDS 159 2e-39
GSVIVT01000729001 assembled CDS 131 8e-31
GSVIVT01031217001 assembled CDS 68 8e-12
GSVIVT01019412001 assembled CDS 66 3e-11
GSVIVT01033815001 assembled CDS 62 6e-10
>GSVIVT01035022001 assembled CDS
Length = 571
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 149/422 (35%), Positives = 221/422 (52%), Gaps = 19/422 (4%)
Query: 13 QALLHSSHMFHEAQ--HSFASHGVKFSSVEVDLPAMMGQKDKAVANLTRGIEGLFKKNKV 70
+ALL S E Q H + G++ S+ D + + + + + K V
Sbjct: 131 KALLAVSGRMRELQSEHHLKALGLQVSAAGYDRQGVADHANNLASKIRNNLTNSMKALGV 190
Query: 71 TYVKGYGKFLSPSEVSVDTIDGGNTVVKGKNIIIATGSDVKSLP-GITIDEEKIVSSTGA 129
+ G G L P +V + V+ KNIIIATGS V +P GI +D + +++S A
Sbjct: 191 DILTGVGTILGPQKVKYGKVGFSENVITAKNIIIATGS-VPFVPKGIEVDGKTVITSDHA 249
Query: 130 LALKEIPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFAPDIVPSMDGEIRKQFQRTL-E 188
L L+ +P + ++G+GYIGLE V+ LGSEVT +E ++P D EI K QR L
Sbjct: 250 LKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLIN 309
Query: 189 KQKMKFMLKTKVVGVDTSGDG--VKLTLEPAAGGD-QTTLEADVVLVSAGRSPFTSGLGL 245
+K+ + + + DG V++ L A + + LE D L++ GR+PFT+GLGL
Sbjct: 310 PRKIDYHTGVFASKITPAKDGKPVRIELIDAKTKEPKDALEVDAALIATGRAPFTNGLGL 369
Query: 246 DKIGVETDKVGRILVNERF------ATNVPGVHAIGDVIPGPMLAHKAEEDGVACVEFIA 299
+ I V T + G I V+ER VP ++ IGD MLAH A G++ VE +
Sbjct: 370 ENISVVTQR-GFIPVDERMRVIDADGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 428
Query: 300 GKQGHVDYDKVPGVVYTHPEVASVGKTEEQVKAL----GVEYRVGKFPFLANSRAKAIDD 355
GK +++ +P +THPE++ VG TE Q + G E V K F AN++A A ++
Sbjct: 429 GKDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENE 488
Query: 356 AEGLVKILAEKETDKILGVHIMAPNAGELIHEAVLALTYDASSEDIARVCHAHPTMSEAL 415
EGL K++ + +ILGVHI +A +LIHEA A+ +DI HAHPT+SE L
Sbjct: 489 GEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVL 548
Query: 416 KE 417
E
Sbjct: 549 DE 550
>GSVIVT01031225001 assembled CDS
Length = 588
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 226/426 (53%), Gaps = 27/426 (6%)
Query: 13 QALLHSSHMFHEAQ--HSFASHGVKFSSVEVDLPAMMGQKD----KAVANLTRGIEGLFK 66
+ALL S + Q H + G++ ++ D + + K +NLT ++GL
Sbjct: 125 KALLAVSGRMRDLQDEHHMKAFGLQVAAAGYDRQGVADHANNLASKIRSNLTNSLKGL-- 182
Query: 67 KNKVTYVKGYGKFLSPSEVSVDTIDGGNTVVKGKNIIIATGSDVKSLP-GITIDEEKIVS 125
V ++G G L P +V + V+ K+IIIATGS V +P G+ +D + +++
Sbjct: 183 --GVDILEGVGTILGPQKVKYGKVGSSGNVITAKDIIIATGS-VSFVPKGVEVDGKTVIT 239
Query: 126 STGALALKEIPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFAPDIVPSMDGEIRKQFQR 185
S AL L+ +P + ++G+GYIGLE V+ LGSEVT VE ++P D EI K +R
Sbjct: 240 SDQALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEIGKLARR 299
Query: 186 TL-EKQKMKFMLKTKVVGVDTSGDG--VKLTLEPAAGGD-QTTLEADVVLVSAGRSPFTS 241
L +K+ + + + DG V + L A + + TLE D L++ GR+PFT
Sbjct: 300 VLINPRKIDYYTGVFASKITPAKDGKPVMIDLIDAKTKEPKDTLEVDAALIATGRAPFTK 359
Query: 242 GLGLDKIGVETDKVGRILVNERFAT------NVPGVHAIGDVIPGPMLAHKAEEDGVACV 295
GLGL+ I VET + G + V+E VP ++ IGD MLAH A G++ V
Sbjct: 360 GLGLENIRVET-QCGFVPVDEHMQVIDADGKLVPHLYCIGDANGKMMLAHAASAQGISVV 418
Query: 296 EFIAGKQGHVDYDKVPGVVYTHPEVASVGKTEEQVKAL----GVEYRVGKFPFLANSRAK 351
E I+GK +++ +P +THPE++ VG TE Q + G E V K F AN++
Sbjct: 419 EQISGKDNVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTGFKANTKVL 478
Query: 352 AIDDAEGLVKILAEKETDKILGVHIMAPNAGELIHEAVLALTYDASSEDIARVCHAHPTM 411
A ++ EGL K++ + +ILGVHI +A +LIHEA A+ +DI HAHPT+
Sbjct: 479 AENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTL 538
Query: 412 SEALKE 417
SE L E
Sbjct: 539 SEVLDE 544
>GSVIVT01017638001 assembled CDS
Length = 310
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 131/245 (53%), Gaps = 80/245 (32%)
Query: 13 QALLHSSHMFHEAQHSFASHGVKFSSVEVDLPAMMGQKDKAVANLTRGIEGLFKKNKVTY 72
+ALLHSSHM+HEA+HSFASHG LFKKNKV Y
Sbjct: 86 KALLHSSHMYHEAKHSFASHG------------------------------LFKKNKVNY 115
Query: 73 VKGYGKFLSPSEVSVDTIDGGNTVVKGKNIIIATGSDVKSLPGITIDEEKIVSSTGALAL 132
++IVSSTGALAL
Sbjct: 116 ------------------------------------------------KRIVSSTGALAL 127
Query: 133 KEIPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFAPDIVPSMDGEIRKQFQRTLEKQKM 192
EIPKKLVV+GAGYIGLEMGSVW RLGSEVTVVEFAPDIVP+MDGEIRKQFQR LEKQKM
Sbjct: 128 SEIPKKLVVVGAGYIGLEMGSVWARLGSEVTVVEFAPDIVPTMDGEIRKQFQRALEKQKM 187
Query: 193 KFMLKTKVVGVDTSGDGVKLTLEPAAGGDQTTLEADVVLVSAGRSPFTSGLGLDKIGV-- 250
KFM+KTKV GVDTSGD V + L A + +L ++ GL KI
Sbjct: 188 KFMVKTKVAGVDTSGDLVSMLLMIAGKAAHYCVGKFPLLANSRAKAIDDAEGLVKILAEK 247
Query: 251 ETDKV 255
ETDK+
Sbjct: 248 ETDKI 252
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/93 (91%), Positives = 86/93 (92%)
Query: 337 YRVGKFPFLANSRAKAIDDAEGLVKILAEKETDKILGVHIMAPNAGELIHEAVLALTYDA 396
Y VGKFP LANSRAKAIDDAEGLVKILAEKETDKILGVHI PNAGELIHEAVLAL Y A
Sbjct: 218 YCVGKFPLLANSRAKAIDDAEGLVKILAEKETDKILGVHIFGPNAGELIHEAVLALHYGA 277
Query: 397 SSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 429
SSEDIAR CHAHPTMSEALKEAAMAT+DKPIHI
Sbjct: 278 SSEDIARTCHAHPTMSEALKEAAMATYDKPIHI 310
>GSVIVT01029079001 assembled CDS
Length = 496
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 190/380 (50%), Gaps = 15/380 (3%)
Query: 39 VEVDLPAMMGQKDKAVANLTRGIEGLFKKNKVTYVKGYGKFLSPSEVSVDTIDGGNTVVK 98
V+ + ++ +K + + L + L V +G GK + P+EV V +DG
Sbjct: 105 VDFNWKKLLHKKTEEIVRLNGIYKRLLTNAGVKLYEGEGKIVGPNEVEVTQLDGTKLCYS 164
Query: 99 GKNIIIATGSDVK--SLPGITIDEEKIVSSTGALALKEIPKKLVVIGAGYIGLEMGSVWG 156
K+I+IATGS + ++PG +E ++S AL+L E+PK+ V++G GYI +E S+W
Sbjct: 165 AKHILIATGSRAQRPTIPG----QELSITSDEALSLDELPKRAVILGGGYIAVEFASIWN 220
Query: 157 RLGSEVTVVEFAPDIVPSMDGEIRKQFQRTLEKQKMKFMLKTKVVGVDTSGDGVKLTLEP 216
+G V + + D E+R R LE + + +T + + + DG+K+ +
Sbjct: 221 GMGVAVDLFFRKELPLRGFDDEMRAVVARNLEARGINLHPRTTLSELVKTEDGIKVITD- 279
Query: 217 AAGGDQTTLEADVVLVSAGRSPFTSGLGLDKIGVETDKVGRILVNERFATNVPGVHAIGD 276
G++ T ADVVL + GR+P T L L+ +GVE DK+G + V+E TN+P + AIGD
Sbjct: 280 --HGEELT--ADVVLFATGRAPNTKRLNLEVVGVELDKMGAVKVDEYSRTNIPSIWAIGD 335
Query: 277 VIPGPMLAHKAEEDGVACVEFIAGKQ-GHVDYDKVPGVVYTHPEVASVGKTEEQVKALGV 335
V L A +G + + G Q DY +P V+ P ++ VG +EEQ
Sbjct: 336 VTNRMNLTPVALMEGTYFAKTVFGGQPSKPDYKDIPCAVFCLPPLSVVGLSEEQATDQA- 394
Query: 336 EYRVGKFPFLANSRAKAIDDAE--GLVKILAEKETDKILGVHIMAPNAGELIHEAVLALT 393
E + F N I + ++K+L + ETDK+LG + P+A E++ +AL
Sbjct: 395 EGDILVFTSTFNPMKNTISGRQEKTIMKLLVDAETDKVLGASMCGPDAPEIMQGIAVALK 454
Query: 394 YDASSEDIARVCHAHPTMSE 413
A+ HP+ +E
Sbjct: 455 CGATKAQFDCTVGIHPSAAE 474
>GSVIVT01000729001 assembled CDS
Length = 559
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 190/408 (46%), Gaps = 24/408 (5%)
Query: 15 LLHSSHMFHEAQHSFASHGVKFSS-VEVDLPAMMGQKDKAVANLTRGIEGLFKKNKVTYV 73
L+++S HE S G KF + + D +M K+ + LT + + K VT +
Sbjct: 139 LVYASKFSHEFDES-GGFGWKFEAEPKHDWSTLMANKNAELQRLTGIYKNILKNAGVTLI 197
Query: 74 KGYGKFLSPSEVSVDTIDGGNTVVKGKNIIIATGSD--VKSLPGITIDEEKIVSSTGALA 131
+G GK + P V VD + ++I+IA G + +PG E + S AL
Sbjct: 198 EGRGKIVDPHTVDVD-----GKLYTARHILIAVGGRPFIPEIPG----SEHAIDSDVALD 248
Query: 132 LKEIPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFAPDIVPSMDGEIRKQFQRTLEKQK 191
L PKK+ ++G GYI LE ++ L ++V V ++ D ++R + +
Sbjct: 249 LPSKPKKIGIVGGGYIALEFAGIFNGLNTDVHVFIRQKKVLRGFDEDVRDFVAEQMSLRG 308
Query: 192 MKFMLKTKVVGVDTSGDGVKLTLEPAAGGDQTTLEA-DVVLVSAGRSPFTSGLGLDKIGV 250
++F + + S DG L+L+ G T+E ++ + GR P T LGL+ +GV
Sbjct: 309 IEFHTEESPQAILKSADG-SLSLKTNKG----TVEGFSHIMFATGRRPNTKNLGLETVGV 363
Query: 251 ETDKVGRILVNERFATNVPGVHAIGDVIPGPMLAHKAEEDGVACVEFIAGKQ-GHVDYDK 309
+ K G I V+E T+VP + A+GDV L A +G A + + G + DY
Sbjct: 364 KMTKTGAIEVDEFSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRA 423
Query: 310 VPGVVYTHPEVASVGKTEEQV--KALGVEYRVGKFPFLANSRAKAIDDAEGLVKILAEKE 367
VP V++ P + VG TEEQ K ++ F L + + D +K++ +
Sbjct: 424 VPSAVFSQPPIGQVGLTEEQAIQKYGDIDVYTANFRPLKATLSGLPDRV--FMKLIVCAK 481
Query: 368 TDKILGVHIMAPNAGELIHEAVLALTYDASSEDIARVCHAHPTMSEAL 415
T+K+LG+H+ ++ E++ +A+ + D HPT +E L
Sbjct: 482 TNKVLGLHMCGEDSPEIVQGFAVAVRAGLTKADFDATVGIHPTAAEEL 529
>GSVIVT01031217001 assembled CDS
Length = 187
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 52 KAVANLTRGIEGLFKKNKVTYVKGYGKFLSPSEVSVDTIDGGNTVVKGKNIIIATGSDVK 111
K +NLT ++GL V ++G G L P +V + V+ K+IIIATGS V
Sbjct: 37 KIRSNLTNSLKGL----GVVILEGVGTILGPQKVKYGKVGSSGNVITAKDIIIATGS-VP 91
Query: 112 SLP-GITIDEEKIVSSTGALALKEIPKKLVVIGAGYIGLEMGSVWGRLGSE 161
+P G+ +D + +++S AL L+ IP + ++G+GYIGLE V+ LGSE
Sbjct: 92 FVPKGVEVDGKTVITSDQALKLEFIPDWIAIVGSGYIGLEFSDVYMALGSE 142
>GSVIVT01019412001 assembled CDS
Length = 490
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 114/243 (46%), Gaps = 43/243 (17%)
Query: 96 VVKGKNIIIATGSDVK--------SLPGI-----TIDEEKIVSSTGALALKEIPKKLVVI 142
++K ++IIATG +LPG+ D + ++SS E +K+V++
Sbjct: 162 LLKYGSLIIATGCTASRLPDKIGGNLPGVHYIRDVADADSLISSL------EKARKVVIV 215
Query: 143 GAGYIGLEMGSVWGRLGSEVTVVEFAPD--IVPSMDGEIRKQFQRTLEKQKMKFMLKTKV 200
G GYIG+E+ + + T++ F D + + ++++ ++ +KF+ +
Sbjct: 216 GGGYIGMEVAAAAAGWKLDTTII-FPEDHLLQRLFTPTLARRYEEFYQENGVKFVKGASI 274
Query: 201 VGVDTSGDG--VKLTLEPAAGGDQTTLEADVVLVSAGRSPFTSGLGLDKIGVETDKVGRI 258
++ DG + LE + +T+EAD +++ G P S +++G+ T VG I
Sbjct: 275 KNIEAGSDGHVTAVKLE-----NGSTIEADTIIIGIGAKPAVSPF--ERVGINT-TVGGI 326
Query: 259 LVNERFATNVPGVHAIGDVIPGPMLAHK----------AEEDGVACVEFIAGKQGHVDYD 308
V+ +F T+VPG+ AIGDV P+ + A C+ + + H+ YD
Sbjct: 327 QVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVEHVDHARRSAQHCINALLTAKTHL-YD 385
Query: 309 KVP 311
+P
Sbjct: 386 YLP 388
>GSVIVT01033815001 assembled CDS
Length = 434
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 92/200 (46%), Gaps = 33/200 (16%)
Query: 102 IIIATGSDVKSLPGITIDEEKIVSSTGALALKEIPK--------------KLVVIGAGYI 147
+IIATGS V L ++ + L L+EI K V++G GYI
Sbjct: 118 LIIATGSTVIRLTDFRVEG---ADAKNILYLREINDADKLIDVIKAKKNGKAVIVGGGYI 174
Query: 148 GLEMGSVWGRLGSEVTVVEFAPDIVPSM-DGEIRKQFQRTLEKQKMKFMLKTKVVGVDTS 206
GLE+ +V +V +V P +P + I ++ + +K + T VG +
Sbjct: 175 GLELSAVMKINNLDVCMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIKGTVAVGFTSD 234
Query: 207 GDG----VKLTLEPAAGGDQTTLEADVVLVSAGRSPFTSGLGLDKIGVETDKVGRILVNE 262
+G VKL D LEAD+V+V G P T+ L K VE +K G I +E
Sbjct: 235 ANGEVKEVKLK-------DGRVLEADIVVVGVGGRPLTT---LFKGQVEEEK-GGIKTDE 283
Query: 263 RFATNVPGVHAIGDVIPGPM 282
F T+VP V+A+GDV P+
Sbjct: 284 FFKTSVPDVYAVGDVATFPL 303