Jatropha Genome Database

JcCB0455931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0455931.10 - phase: 0 
         (94 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009282001 assembled CDS                                       127   9e-31
GSVIVT01011464001 assembled CDS                                        99   5e-22
GSVIVT01012531001 assembled CDS                                        97   1e-21
GSVIVT01000831001 assembled CDS                                        75   5e-15

>GSVIVT01009282001 assembled CDS
          Length = 722

 Score =  127 bits (319), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/93 (64%), Positives = 73/93 (78%)

Query: 1  MDIGALLTSAGINIALCILLFSLYSILRKQPSNRVVYFGRRLASVRIRNNDFFSIDRFVP 60
          M + ALLTSAGINIA C +L SLYSILRKQPSN  VYFGRRLA    + +D F  +RFVP
Sbjct: 1  MKLYALLTSAGINIAFCAILLSLYSILRKQPSNVSVYFGRRLAQFSPKPHDPFCFERFVP 60

Query: 61 SPSWIWKAWETTEEEILAIGGLDALAFQRMLTF 93
          SP W+ KAWET+EEEIL++GG+DA+ F R++ F
Sbjct: 61 SPGWMVKAWETSEEEILSVGGMDAVVFLRIVVF 93


>GSVIVT01011464001 assembled CDS
          Length = 917

 Score = 98.6 bits (244), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 64/94 (68%)

Query: 1  MDIGALLTSAGINIALCILLFSLYSILRKQPSNRVVYFGRRLASVRIRNNDFFSIDRFVP 60
          M + ALLTS GIN+ LC L F+LYSILRKQP N  VY  R +A  + +  + F++DR +P
Sbjct: 1  MILSALLTSVGINLGLCFLFFTLYSILRKQPGNIHVYAPRLVAEGKSQRTNHFNLDRLLP 60

Query: 61 SPSWIWKAWETTEEEILAIGGLDALAFQRMLTFG 94
          S  W+ +AW+ +EE++L+  GLDA+ F R+  F 
Sbjct: 61 SAGWVTRAWQPSEEDLLSTSGLDAVVFMRIFIFS 94


>GSVIVT01012531001 assembled CDS
          Length = 888

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/93 (48%), Positives = 63/93 (67%)

Query: 1  MDIGALLTSAGINIALCILLFSLYSILRKQPSNRVVYFGRRLASVRIRNNDFFSIDRFVP 60
          M + +LLTS GIN+ LCIL F LYSIL+KQP N  VY  R LA  + +    F+++R +P
Sbjct: 1  MLVSSLLTSLGINLGLCILFFMLYSILKKQPGNFEVYAPRLLAEGKSKKISHFNLERLLP 60

Query: 61 SPSWIWKAWETTEEEILAIGGLDALAFQRMLTF 93
          SP W+ +AW+ +EEE+L+  GLD + F R+  F
Sbjct: 61 SPGWVRRAWQPSEEELLSSSGLDTVVFMRIFIF 93


>GSVIVT01000831001 assembled CDS
          Length = 750

 Score = 75.5 bits (184), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 1   MDIGALLTSAGINIALCILLFSLYSILRKQPSNRVVYFGRRLASVRIRNNDFFSID---- 56
           M+  +L  SA INI L ++   L+SIL+KQPSN  +Y+ RRL+      +     +    
Sbjct: 1   MNAQSLFASAAINIGLALITIFLFSILKKQPSNAPIYYSRRLSHRHPIPSHHHHHNWCCS 60

Query: 57  ---RFVPSPSWIWKAWETTEEEILAIGGLDALAFQRMLTFG 94
              RF+PS SWI +A+  +E+EIL   GLDAL   R+  FG
Sbjct: 61  TLLRFLPSVSWIPQAFRVSEDEILHTSGLDALVVIRLFKFG 101