Jatropha Genome Database

JcCB0455701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0455701.10 + phase: 0 
         (146 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011101001 assembled CDS                                       164   9e-42
GSVIVT01019766001 assembled CDS                                       139   6e-34
GSVIVT01019765001 assembled CDS                                       130   2e-31
GSVIVT01010737001 assembled CDS                                       122   6e-29
GSVIVT01035981001 assembled CDS                                       118   1e-27

>GSVIVT01011101001 assembled CDS
          Length = 170

 Score =  164 bits (416), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 92/138 (66%), Gaps = 33/138 (23%)

Query: 1   MGGSASVPEKSIHEFTVKDARGQEVDLSVYKGKVLLVVNVASKWXXXXXXXXXXXXXXXE 60
           MG S S  EKSIHEF VKD + ++VDLSVYKGKVLLVVNVASK                 
Sbjct: 1   MGASQSGSEKSIHEFRVKDYKAKDVDLSVYKGKVLLVVNVASKC---------------- 44

Query: 61  IITWKFENSEFWVLWNSGFTDSNYTQLTELYKKYKDQGLEILAFPCNQFLKQEPGSSENA 120
                            G TDSNYTQLTELY KYKD+G EILAFPCNQFLKQEPGSSE A
Sbjct: 45  -----------------GLTDSNYTQLTELYNKYKDRGFEILAFPCNQFLKQEPGSSEQA 87

Query: 121 QEFACTRYKAEYPIFQKV 138
           QEFACTRYKAEYPIF KV
Sbjct: 88  QEFACTRYKAEYPIFHKV 105


>GSVIVT01019766001 assembled CDS
          Length = 168

 Score =  139 bits (349), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 87/136 (63%), Gaps = 34/136 (25%)

Query: 3   GSASVPEKSIHEFTVKDARGQEVDLSVYKGKVLLVVNVASKWXXXXXXXXXXXXXXXEII 62
            S S P+ S+H FTVKDARG +VDLS+YKGK LL+VNVAS+                   
Sbjct: 2   ASQSSPQ-SVHSFTVKDARGNDVDLSIYKGKALLIVNVASQC------------------ 42

Query: 63  TWKFENSEFWVLWNSGFTDSNYTQLTELYKKYKDQGLEILAFPCNQFLKQEPGSSENAQE 122
                          G T+SNYT+L +LY+KYKDQGLEILAFPCNQF  QEPGS+E  ++
Sbjct: 43  ---------------GLTNSNYTELHQLYEKYKDQGLEILAFPCNQFGAQEPGSNEEIEK 87

Query: 123 FACTRYKAEYPIFQKV 138
           F CTR+KAEYPIF K+
Sbjct: 88  FVCTRFKAEYPIFDKI 103


>GSVIVT01019765001 assembled CDS
          Length = 170

 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 86/131 (65%), Gaps = 34/131 (25%)

Query: 8   PEKSIHEFTVKDARGQEVDLSVYKGKVLLVVNVASKWXXXXXXXXXXXXXXXEIITWKFE 67
           PE SI++FTVKDA G+ V+LS+YKGKVLL+VNVASK                        
Sbjct: 9   PE-SIYDFTVKDAEGKSVNLSIYKGKVLLIVNVASK------------------------ 43

Query: 68  NSEFWVLWNSGFTDSNYTQLTELYKKYKDQGLEILAFPCNQFLKQEPGSSENAQEFACTR 127
                     G T+SNYT+L +LY+KYKDQGLEILAFPCNQF ++EPGS+E   EF CTR
Sbjct: 44  ---------CGLTNSNYTELNQLYEKYKDQGLEILAFPCNQFGEEEPGSNEQILEFVCTR 94

Query: 128 YKAEYPIFQKV 138
           +K+E+P+F K+
Sbjct: 95  FKSEFPVFDKI 105


>GSVIVT01010737001 assembled CDS
          Length = 167

 Score =  122 bits (306), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 77/134 (57%), Gaps = 33/134 (24%)

Query: 5   ASVPEKSIHEFTVKDARGQEVDLSVYKGKVLLVVNVASKWXXXXXXXXXXXXXXXEIITW 64
           A    KSI++FTVKD RG +V LS Y GKVLL+VNVASK                     
Sbjct: 2   AEAAPKSIYDFTVKDIRGNDVSLSDYNGKVLLIVNVASK--------------------- 40

Query: 65  KFENSEFWVLWNSGFTDSNYTQLTELYKKYKDQGLEILAFPCNQFLKQEPGSSENAQEFA 124
                        G T SNY +L  LY+KYK QG EILAFPCNQFL QEPGS+E   E A
Sbjct: 41  ------------CGLTHSNYKELNVLYEKYKSQGFEILAFPCNQFLGQEPGSNEEILEAA 88

Query: 125 CTRYKAEYPIFQKV 138
           CT +KAE+PIF KV
Sbjct: 89  CTMFKAEFPIFDKV 102


>GSVIVT01035981001 assembled CDS
          Length = 207

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 80/130 (61%), Gaps = 33/130 (25%)

Query: 9   EKSIHEFTVKDARGQEVDLSVYKGKVLLVVNVASKWXXXXXXXXXXXXXXXEIITWKFEN 68
           EKS++++TVKD   ++V LS +KGKVLL+VNVASK                         
Sbjct: 47  EKSLYDYTVKDIEKKDVPLSKFKGKVLLIVNVASKC------------------------ 82

Query: 69  SEFWVLWNSGFTDSNYTQLTELYKKYKDQGLEILAFPCNQFLKQEPGSSENAQEFACTRY 128
                    G T SNY++L+ +Y+KYK QG EILAFPCNQF  QEPGS+   ++FACTR+
Sbjct: 83  ---------GLTASNYSELSHIYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRF 133

Query: 129 KAEYPIFQKV 138
           KAE+PIF KV
Sbjct: 134 KAEFPIFDKV 143