Jatropha Genome Database

JcCB0455001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0455001.10 - phase: 1 /pseudo/partial
         (287 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028241001 assembled CDS                                       181   3e-46

>GSVIVT01028241001 assembled CDS
          Length = 549

 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 92/100 (92%)

Query: 188 QTQSELVEAVDRELRKMLIKPNAKDPFVLGVRVWPQAIPQFLIGHFDILDAAKGALRDKG 247
           +T+SELVEAVDR+LRKMLI PNAKDP VLGVRVWPQAIPQFLIGH D+LDAAK ALRD G
Sbjct: 450 KTESELVEAVDRDLRKMLINPNAKDPLVLGVRVWPQAIPQFLIGHLDLLDAAKSALRDGG 509

Query: 248 LEGLFLGGNYVSGVALGRCVEGAYEVAAEVTNFLSQYAYK 287
            +G+FLGGNYVSGVALGRCVEGAYEVAAEV +FLSQY YK
Sbjct: 510 FQGMFLGGNYVSGVALGRCVEGAYEVAAEVADFLSQYVYK 549