Jatropha Genome Database

JcCB0454891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0454891.10 + phase: 0 /pseudo
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018736001 assembled CDS                                       287   4e-78

>GSVIVT01018736001 assembled CDS
          Length = 605

 Score =  287 bits (734), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 142/243 (58%), Positives = 178/243 (73%), Gaps = 2/243 (0%)

Query: 14  GTQYMSKLDEFVNFIEKVRKYGSIPPSYSAESKXXXXXXXXXXXVTNGRVAFERLQNCLL 73
           G +Y SKLDEF +F+E++RKYG IPPS++ ESK           VTNG  ++ RL+NCL 
Sbjct: 178 GIRYTSKLDEFESFVERMRKYGLIPPSFAGESKSSVILLIDDLPVTNGNASYRRLRNCLQ 237

Query: 74  LLVRTTRIPTVILVTDYDKADLADN--TSRYMEELQSSLESAGACKVAFNPITNNSIKKA 131
           LL ++T+IPT IL+TDY KAD ADN  T+R +EELQ SLE+AGACK+AFNPIT+NSIKK 
Sbjct: 238 LLAQSTQIPTAILITDYGKADSADNIATARCLEELQLSLENAGACKIAFNPITSNSIKKT 297

Query: 132 LTKICKHEQFNVTAEQIDLIAKASGGDIRNAITSLQLFCVKPNMGXXXXXXXXTPSYSDG 191
           L+KIC+ EQ  VTA+QIDLIA++SGGD+R+AITSLQ FC+KP+            +YS  
Sbjct: 298 LSKICRQEQCGVTADQIDLIARSSGGDVRHAITSLQYFCLKPDPMLSLSFSEPARTYSKE 357

Query: 192 KPDDINSLICGFSLLFGRDETLSLFHALGKFLHNKRETEVTMGSDVCYFFYGTKFSRLPL 251
           K D++N L  GFSL FGRDETLSLFHALGKFLHNKRE+E  +      F    + +RLPL
Sbjct: 358 KSDELNPLDDGFSLPFGRDETLSLFHALGKFLHNKRESENAIAPGQEAFLVRERLTRLPL 417

Query: 252 EMD 254
           +MD
Sbjct: 418 KMD 420