Jatropha Genome Database
- JcCB0454581.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0454581.10 + phase: 2 /partial
(68 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01022245001 assembled CDS 105 4e-24
GSVIVT01033194001 assembled CDS 87 2e-18
GSVIVT01035426001 assembled CDS 76 3e-15
GSVIVT01033195001 assembled CDS 69 4e-13
GSVIVT01011472001 assembled CDS 59 7e-10
GSVIVT01021397001 assembled CDS 58 1e-09
GSVIVT01028147001 assembled CDS 56 3e-09
GSVIVT01014854001 assembled CDS 55 7e-09
GSVIVT01001332001 assembled CDS 55 9e-09
GSVIVT01037775001 assembled CDS 54 1e-08
GSVIVT01020864001 assembled CDS 54 1e-08
GSVIVT01034968001 assembled CDS 53 2e-08
GSVIVT01030258001 assembled CDS 53 3e-08
GSVIVT01018300001 assembled CDS 53 3e-08
GSVIVT01007006001 assembled CDS 53 3e-08
GSVIVT01019109001 assembled CDS 53 4e-08
GSVIVT01024624001 assembled CDS 52 5e-08
GSVIVT01030046001 assembled CDS 52 8e-08
GSVIVT01035965001 assembled CDS 51 9e-08
GSVIVT01022259001 assembled CDS 51 1e-07
GSVIVT01033063001 assembled CDS 50 1e-07
GSVIVT01012196001 assembled CDS 50 2e-07
GSVIVT01026969001 assembled CDS 49 3e-07
GSVIVT01025562001 assembled CDS 49 4e-07
GSVIVT01010525001 assembled CDS 49 4e-07
GSVIVT01023600001 assembled CDS 47 2e-06
GSVIVT01012682001 assembled CDS 47 3e-06
GSVIVT01035885001 assembled CDS 46 3e-06
GSVIVT01008553001 assembled CDS 46 3e-06
GSVIVT01028244001 assembled CDS 46 4e-06
GSVIVT01035884001 assembled CDS 45 5e-06
GSVIVT01030453001 assembled CDS 45 5e-06
GSVIVT01020060001 assembled CDS 45 8e-06
GSVIVT01028129001 assembled CDS 45 8e-06
GSVIVT01029688001 assembled CDS 45 9e-06
>GSVIVT01022245001 assembled CDS
Length = 193
Score = 105 bits (262), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 54/57 (94%), Gaps = 1/57 (1%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPCMVYYNQMPLLV-PNAWT 56
NYYKC+SGGCNVKKRVERDREDS YVITTY+G+HNHESPC+VYY+Q+PL+V NAWT
Sbjct: 127 NYYKCASGGCNVKKRVERDREDSSYVITTYEGVHNHESPCVVYYDQVPLMVSSNAWT 183
>GSVIVT01033194001 assembled CDS
Length = 156
Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 43/52 (82%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPCMVYYNQMPLLVP 52
NYY+CSSG C VKKR+ERD EDS YVITTY GIHNH P + YYNQMPL+VP
Sbjct: 89 NYYRCSSGDCQVKKRIERDIEDSSYVITTYTGIHNHPIPGVGYYNQMPLMVP 140
>GSVIVT01035426001 assembled CDS
Length = 166
Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/40 (82%), Positives = 36/40 (90%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPC 40
NYY+CS GCNVKKRVERDRED +YVITTY+GIHNHESP
Sbjct: 125 NYYRCSVDGCNVKKRVERDREDPKYVITTYEGIHNHESPS 164
>GSVIVT01033195001 assembled CDS
Length = 101
Score = 68.9 bits (167), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 35/39 (89%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
NYY+CSS GC VKKRVERDR+DS YVITTY+G+HNH +P
Sbjct: 40 NYYRCSSRGCQVKKRVERDRDDSSYVITTYEGVHNHPTP 78
>GSVIVT01011472001 assembled CDS
Length = 889
Score = 58.5 bits (140), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
+YYKC+S GCNV+K VER D + VITTY+G HNH+ P
Sbjct: 796 SYYKCTSLGCNVRKHVERASTDPKAVITTYEGKHNHDVP 834
>GSVIVT01021397001 assembled CDS
Length = 319
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPCMVYYNQMPLLVPNAWT 56
+YY+C++ C VKKRVER +D VITTY+G HNH+ P + N +L P+ T
Sbjct: 202 SYYRCTTQKCTVKKRVERSFQDPSTVITTYEGQHNHQIPVTLRGNAGGMLPPSVLT 257
>GSVIVT01028147001 assembled CDS
Length = 302
Score = 56.2 bits (134), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPCM 41
+YY+C+S CNVKKRVER +D V+TTY+G H H SP M
Sbjct: 170 SYYRCTSASCNVKKRVERCFKDPAIVVTTYEGQHTHPSPIM 210
>GSVIVT01014854001 assembled CDS
Length = 622
Score = 55.1 bits (131), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
+YYKC++ GC V+K VER D + VITTY+G HNH+ P
Sbjct: 461 SYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVP 499
>GSVIVT01001332001 assembled CDS
Length = 435
Score = 54.7 bits (130), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPC 40
+YYKC++ GCNV+K VER D + VITTY+G HNH+ P
Sbjct: 381 SYYKCTNPGCNVRKHVERAATDPKAVITTYEGKHNHDVPA 420
>GSVIVT01037775001 assembled CDS
Length = 552
Score = 53.9 bits (128), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 10/60 (16%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPC----------MVYYNQMPLL 50
+YYKC++ GC V+K VER D + VITTY+G HNH+ P V N MP++
Sbjct: 389 SYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTNSHDAAGQVALNGMPMI 448
>GSVIVT01020864001 assembled CDS
Length = 311
Score = 53.9 bits (128), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPCMVYYNQMPLL 50
+YY+C++ C VKKRVER +D VITTY+G HNH P + N +L
Sbjct: 194 SYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHPCPATIRGNAAAML 243
>GSVIVT01034968001 assembled CDS
Length = 309
Score = 53.1 bits (126), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPCM 41
+YY+C++ C VKKRVER +D V+TTY+G H H P M
Sbjct: 176 SYYRCTTAACGVKKRVERSSDDPTTVVTTYEGQHTHPCPVM 216
>GSVIVT01030258001 assembled CDS
Length = 513
Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPC 40
+YYKC+S GC V+K VER +D R V+TTY+G HNH+ P
Sbjct: 375 SYYKCTSIGCPVRKHVERSSKDIRAVLTTYEGKHNHDVPA 414
>GSVIVT01018300001 assembled CDS
Length = 228
Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPC 40
+YY+C+ C VKKRVER ED R VITTY+G HNH SPC
Sbjct: 176 SYYRCTHTNCRVKKRVERLSEDCRMVITTYEGRHNH-SPC 214
>GSVIVT01007006001 assembled CDS
Length = 550
Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPC 40
+YYKC++ GC V+K VER D + VITTY+G HNH+ P
Sbjct: 382 SYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPA 421
>GSVIVT01019109001 assembled CDS
Length = 486
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPC 40
NYYKC+S GC+V++ VER + + +I TY+G HNHE P
Sbjct: 259 NYYKCTSTGCSVRRHVERASNNQKSIIATYEGKHNHEVPA 298
>GSVIVT01024624001 assembled CDS
Length = 570
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPC 40
+YYKC++ GC V+K VER D R VITTY+G HNH+ P
Sbjct: 454 SYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 493
>GSVIVT01030046001 assembled CDS
Length = 364
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
+YY+CS+ GC VKK VER D + VITTY+G H+H+ P
Sbjct: 263 SYYRCSNAGCPVKKHVERASHDPKMVITTYEGQHDHDMP 301
>GSVIVT01035965001 assembled CDS
Length = 530
Score = 51.2 bits (121), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
+YY+C+S GC V+K VERD +D +I TY+G H+H+ P
Sbjct: 370 SYYRCTSAGCPVRKHVERDTDDKTTIIVTYEGKHDHDRP 408
>GSVIVT01022259001 assembled CDS
Length = 226
Score = 50.8 bits (120), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPCMVYYNQMP 48
+YY+C+ C VKKRVER ED R VITTY+G H H + +Q P
Sbjct: 171 SYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDLEESQAP 218
>GSVIVT01033063001 assembled CDS
Length = 182
Score = 50.4 bits (119), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNH--ESPCMVY---YNQMPLLVP 52
+YY+C+ GCNVKK+V+R +D V+TTY+G+H H E P + NQM + P
Sbjct: 126 SYYRCTHQGCNVKKQVQRLSKDESIVVTTYEGVHTHPIEKPTDNFEHILNQMQIYAP 182
>GSVIVT01012196001 assembled CDS
Length = 283
Score = 50.1 bits (118), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHES 38
+YY+C++ C VKKRVER ED VITTY+G H H +
Sbjct: 161 SYYRCTNSKCTVKKRVERSSEDPSIVITTYEGQHCHHT 198
>GSVIVT01026969001 assembled CDS
Length = 201
Score = 49.3 bits (116), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESPCMVYYNQM-PLL 50
+YY+C+ C+VKK+V+R +D+ V+TTY+GIHNH PC + PLL
Sbjct: 144 SYYRCTHHTCDVKKQVQRLSKDTSVVVTTYEGIHNH--PCEKLMETLSPLL 192
>GSVIVT01025562001 assembled CDS
Length = 438
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
+YY+C+S CNV+K VER ED ITTY+G HNH+ P
Sbjct: 378 SYYRCTSLKCNVRKHVERASEDPGSFITTYEGKHNHDMP 416
>GSVIVT01010525001 assembled CDS
Length = 189
Score = 48.9 bits (115), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 30/37 (81%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHE 37
+YY+C+ GCNVKK+V+R +D V+TTY+G+H+H+
Sbjct: 132 SYYRCTHQGCNVKKQVQRLSKDEGIVVTTYEGMHSHQ 168
>GSVIVT01023600001 assembled CDS
Length = 499
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
NYY+C+S GC V+K +E +++ VI TY GIH+H+ P
Sbjct: 382 NYYRCTSAGCPVRKHIETAIDNTSAVIITYKGIHDHDMP 420
>GSVIVT01012682001 assembled CDS
Length = 510
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 2 YYKCSSG-GCNVKKRVERDREDSRYVITTYDGIHNHESP 39
YY+C+ GC V+K+V+R ED +ITTY+G HNH P
Sbjct: 298 YYRCTMAVGCPVRKQVQRCAEDRSILITTYEGTHNHPLP 336
>GSVIVT01035885001 assembled CDS
Length = 286
Score = 46.2 bits (108), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 2 YYKCS-SGGCNVKKRVERDREDSRYVITTYDGIHNHESPCMV 42
Y+KCS + C VKK+V+R ED +I TY+G HNH+ P V
Sbjct: 182 YFKCSFAPTCPVKKKVQRSAEDQSLLIATYEGEHNHQQPSPV 223
>GSVIVT01008553001 assembled CDS
Length = 151
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 1 NYYKCSSGGCNVKKRVERDREDSRYVITTYDGIHNH 36
+YY+C+ CNVKK+V+R +D V+TTY+GIH H
Sbjct: 93 SYYRCTYKDCNVKKQVQRLSKDEEIVVTTYEGIHTH 128
>GSVIVT01028244001 assembled CDS
Length = 479
Score = 45.8 bits (107), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 2 YYKCS-SGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
YY+C+ + GC V+K+V+R ED +ITTY+G HNH P
Sbjct: 257 YYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLP 295
>GSVIVT01035884001 assembled CDS
Length = 262
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 2 YYKCS-SGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
Y++CS + C VKK+V+R EDS ++ TY+G HNHE P
Sbjct: 119 YFRCSMAPQCPVKKKVQRCMEDSSILVATYEGAHNHEPP 157
>GSVIVT01030453001 assembled CDS
Length = 498
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 2 YYKCS-SGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
YY+C+ + GC V+K+V+R ED +ITTY+G HNH P
Sbjct: 332 YYRCTMAAGCPVRKQVQRCAEDRSILITTYEGNHNHPLP 370
>GSVIVT01020060001 assembled CDS
Length = 594
Score = 45.1 bits (105), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 2 YYKCS-SGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
YY+C+ S C V+K+V+R ED+ +ITTY+G HNH P
Sbjct: 267 YYRCTVSPSCPVRKQVQRCAEDTSILITTYEGTHNHPLP 305
>GSVIVT01028129001 assembled CDS
Length = 242
Score = 44.7 bits (104), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 2 YYKCS-SGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
YY+CS S GC+ KK+VER R D+ +I TY HNH P
Sbjct: 69 YYRCSTSKGCSAKKQVERCRTDASMLIITYTSSHNHPGP 107
>GSVIVT01029688001 assembled CDS
Length = 490
Score = 44.7 bits (104), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 2 YYKCS-SGGCNVKKRVERDREDSRYVITTYDGIHNHESP 39
YY+C+ + GC V+K+V+R ED +ITTY+G HNH P
Sbjct: 254 YYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLP 292