Jatropha Genome Database
- JcCB0454511.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0454511.10 - phase: 0 /partial
(165 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01019546001 assembled CDS 315 9e-87
GSVIVT01027147001 assembled CDS 293 3e-80
GSVIVT01013218001 assembled CDS 227 2e-60
GSVIVT01018380001 assembled CDS 206 3e-54
GSVIVT01011654001 assembled CDS 194 1e-50
GSVIVT01037193001 assembled CDS 46 8e-06
GSVIVT01023155001 assembled CDS 46 9e-06
>GSVIVT01019546001 assembled CDS
Length = 609
Score = 315 bits (806), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 147/165 (89%), Positives = 157/165 (95%)
Query: 1 ELKQYPALRVEVGNAAIESLDKMKEESRKATLKLVDMECSYLTVDFFRKLPQDVDKGGNP 60
E KQYPALR+EV NAA +SLD+M++ES+KATLKLVDMECSYLTVDFFRKLPQD++KGGNP
Sbjct: 445 EFKQYPALRIEVANAACDSLDRMRDESKKATLKLVDMECSYLTVDFFRKLPQDIEKGGNP 504
Query: 61 THSIFDRYNDSYLRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELG 120
THSIFDRYNDSYLRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELG
Sbjct: 505 THSIFDRYNDSYLRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELG 564
Query: 121 KMEQKYLSSLLNEDPAVMERRAALAKRLELYRSAQAEIDTVAWSK 165
K+E K L+SLLNEDPAVM RR ALAKRLELYRSAQAEID VAWSK
Sbjct: 565 KLEPKQLASLLNEDPAVMARRTALAKRLELYRSAQAEIDAVAWSK 609
>GSVIVT01027147001 assembled CDS
Length = 614
Score = 293 bits (749), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 138/165 (83%), Positives = 152/165 (92%)
Query: 1 ELKQYPALRVEVGNAAIESLDKMKEESRKATLKLVDMECSYLTVDFFRKLPQDVDKGGNP 60
ELKQYP+LRVEV NAA E+LD+MKEESR+AT++LVDME SYLTV+FFRKLPQD++KGGNP
Sbjct: 450 ELKQYPSLRVEVTNAACEALDRMKEESRRATVQLVDMETSYLTVEFFRKLPQDIEKGGNP 509
Query: 61 THSIFDRYNDSYLRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELG 120
THSIFDRYNDSYLRRIGTTVLSYV MV A+LRNSIPKS+VYCQVREAKRSLLDHFF +LG
Sbjct: 510 THSIFDRYNDSYLRRIGTTVLSYVTMVVASLRNSIPKSVVYCQVREAKRSLLDHFFADLG 569
Query: 121 KMEQKYLSSLLNEDPAVMERRAALAKRLELYRSAQAEIDTVAWSK 165
K E K L SLL+EDPAVM+RR LAKRLELYRSAQAEID VAWSK
Sbjct: 570 KKETKQLGSLLDEDPAVMQRRTNLAKRLELYRSAQAEIDAVAWSK 614
>GSVIVT01013218001 assembled CDS
Length = 613
Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 104/165 (63%), Positives = 137/165 (83%)
Query: 1 ELKQYPALRVEVGNAAIESLDKMKEESRKATLKLVDMECSYLTVDFFRKLPQDVDKGGNP 60
EL+++P L+ E+ A+ E+L++ +EES+K TL+LV+ME SYLTVDFFRKLPQ+V+KGGNP
Sbjct: 449 ELRRFPTLQAELAAASNEALERFREESKKTTLRLVEMESSYLTVDFFRKLPQEVEKGGNP 508
Query: 61 THSIFDRYNDSYLRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELG 120
+ S DRY + + RRIG+ V YV MV TL+NSIPK++V+CQVREAKRSLLDHF+T++G
Sbjct: 509 SASAADRYGEGHFRRIGSNVSQYVAMVSETLKNSIPKAVVHCQVREAKRSLLDHFYTQVG 568
Query: 121 KMEQKYLSSLLNEDPAVMERRAALAKRLELYRSAQAEIDTVAWSK 165
K E K LS LL+EDPA+MERR AKRLELY+SA+ EID+V+WS+
Sbjct: 569 KKEGKQLSQLLDEDPALMERRQQCAKRLELYKSARDEIDSVSWSR 613
>GSVIVT01018380001 assembled CDS
Length = 619
Score = 206 bits (525), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/168 (57%), Positives = 132/168 (78%), Gaps = 5/168 (2%)
Query: 1 ELKQYPALRVEVGNAAIESLDKMKEESRKATLKLVDMECSYLTVDFFRKLPQDVDK---- 56
ELK++P L+ E+ A ESL++ +++S+K ++LV+ME SYLTV+FFRKLPQ+V+K
Sbjct: 450 ELKRFPTLQAEISAATGESLERFRDDSKKTVIRLVEMEASYLTVEFFRKLPQEVEKVGNP 509
Query: 57 -GGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHF 115
GGNP S DRY + + RRI + V SYVNMV TLRN+IPK++V+CQVREAK+SLL+ F
Sbjct: 510 AGGNPAASTVDRYTEGHFRRIASNVSSYVNMVSDTLRNTIPKAVVHCQVREAKQSLLNLF 569
Query: 116 FTELGKMEQKYLSSLLNEDPAVMERRAALAKRLELYRSAQAEIDTVAW 163
+T++GK E K LS +L+EDPA+MERR AKRLELY++A+ EID+V+W
Sbjct: 570 YTQIGKKEGKQLSQMLDEDPALMERRQQCAKRLELYKAARDEIDSVSW 617
>GSVIVT01011654001 assembled CDS
Length = 613
Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 131/166 (78%), Gaps = 3/166 (1%)
Query: 1 ELKQYPALRVEVGNAAIESLDKMKEESRKATLKLVDMECSYLTVDFFRKL---PQDVDKG 57
ELK++P+L ++ AA E+L++ +EESRK L+LV+ME SYLTVDFFRK + +K
Sbjct: 447 ELKRFPSLTADIAAAATEALERFREESRKTVLRLVEMESSYLTVDFFRKQQFETEKQEKN 506
Query: 58 GNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFT 117
NP+ DRY + +LRRIG+ V Y++M+C T++NSIPK++VYCQVREAKRSLL HF+
Sbjct: 507 ANPSGPNMDRYTEIHLRRIGSNVSGYISMICETMKNSIPKAVVYCQVREAKRSLLSHFYA 566
Query: 118 ELGKMEQKYLSSLLNEDPAVMERRAALAKRLELYRSAQAEIDTVAW 163
+LG+ E++ L S+L+EDPA+ME+R A+AKRLELY+SA+ EID+V+W
Sbjct: 567 QLGRREKEQLGSMLDEDPALMEKRQAIAKRLELYKSARDEIDSVSW 612
>GSVIVT01037193001 assembled CDS
Length = 931
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 73 LRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKMEQKYLSSLLN 132
LR + V YV V +L ++PK++V CQV +AK +L+ ++ + + LL
Sbjct: 743 LRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTARIEELLL 802
Query: 133 EDPAVMERR 141
ED V RR
Sbjct: 803 EDQNVKRRR 811
>GSVIVT01023155001 assembled CDS
Length = 920
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 73 LRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKMEQKYLSSLLN 132
LR + V YV V +L ++PK++V CQV ++K +L+ ++ + + LL
Sbjct: 734 LRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKSKEDMLNQLYSSVSAQSTARIEELLQ 793
Query: 133 EDPAVMERR 141
ED V RR
Sbjct: 794 EDQNVKRRR 802