Jatropha Genome Database

JcCB0454241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0454241.10 + phase: 0 
         (408 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019746001 assembled CDS                                       300   9e-82

>GSVIVT01019746001 assembled CDS
          Length = 347

 Score =  300 bits (768), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 160/250 (64%), Positives = 174/250 (69%), Gaps = 55/250 (22%)

Query: 133 MGLRTGMLSTVAYYIHGDNKLESPNTAPDAVLVQNLMAKMVHNGTEAVVMEVSSQGPASG 192
           MGLRTGMLSTVAYY+HG NKLE+P T P                 +AV+++         
Sbjct: 1   MGLRTGMLSTVAYYVHGKNKLEAPYTTP-----------------DAVLIQ--------- 34

Query: 193 SCNEVDFDISVFTNLRVDHLDFQGTEEEYRDAKAELFARMVDPERHRKIVNIEDPNASFF 252
                                        ++AKA+LF+RMVDP+RHRKIVNI+DPNA FF
Sbjct: 35  -----------------------------KNAKAKLFSRMVDPDRHRKIVNIDDPNAPFF 65

Query: 253 IAQGNPDVPVVTFAMDNKSADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 312
           IAQGNPDVPVVTFAM+NK ADVHPLKFELSLFETQVLV TP GILEISSGLLGRHNIYNI
Sbjct: 66  IAQGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILEISSGLLGRHNIYNI 125

Query: 313 LXXXXXXXXXXXPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVDSAHTPEALSRLLDSV 372
           L           PLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVD AHTP+ALSRLLDSV
Sbjct: 126 LAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 185

Query: 373 RELRPRRIIT 382
           REL  RRIIT
Sbjct: 186 RELGARRIIT 195