Jatropha Genome Database

JcCB0453971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453971.10 + phase: 2 /partial
         (132 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014092001 assembled CDS                                       236   2e-63
GSVIVT01021312001 assembled CDS                                        98   1e-21
GSVIVT01020754001 assembled CDS                                        91   2e-19
GSVIVT01007789001 assembled CDS                                        87   2e-18
GSVIVT01011634001 assembled CDS                                        83   3e-17
GSVIVT01020215001 assembled CDS                                        82   6e-17
GSVIVT01021260001 assembled CDS                                        80   2e-16
GSVIVT01021313001 assembled CDS                                        64   3e-11
GSVIVT01031857001 assembled CDS                                        49   1e-06

>GSVIVT01014092001 assembled CDS
          Length = 880

 Score =  236 bits (603), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 113/129 (87%), Positives = 119/129 (92%)

Query: 1   PEGVEDQGKLTRVAAFPIGIDSERFIRALELPQVQDHMEELKERFAGRKVILGVDRLDTI 60
           PEGVEDQG+LTRVAAFPIGIDS RFIRAL+ PQVQD + ELK  F GRKV+LGVDRLD I
Sbjct: 309 PEGVEDQGRLTRVAAFPIGIDSHRFIRALDAPQVQDRINELKRTFTGRKVMLGVDRLDMI 368

Query: 61  KGIPQKILAFEEFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGT 120
           KGIPQKILAFE+FLEEN EW+ KVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGT
Sbjct: 369 KGIPQKILAFEKFLEENSEWQQKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGT 428

Query: 121 LTAVPIHHL 129
           LTAVPIHHL
Sbjct: 429 LTAVPIHHL 437


>GSVIVT01021312001 assembled CDS
          Length = 5984

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/50 (92%), Positives = 50/50 (100%)

Query: 1   PEGVEDQGKLTRVAAFPIGIDSERFIRALELPQVQDHMEELKERFAGRKV 50
           PEGVEDQGKLTRVAAFPIGIDS+RFIRALELPQVQ+H++ELKERFAGRKV
Sbjct: 314 PEGVEDQGKLTRVAAFPIGIDSDRFIRALELPQVQNHIKELKERFAGRKV 363


>GSVIVT01020754001 assembled CDS
          Length = 782

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 72/124 (58%)

Query: 3   GVEDQGKLTRVAAFPIGIDSERFIRALELPQVQDHMEELKERFAGRKVILGVDRLDTIKG 62
           G+E  G+   +   P+GI   R    ++L   Q  + ELK++F G+ V+LGVD +D  KG
Sbjct: 216 GLEYYGRTVGIKIMPVGIHMGRIASVMKLADKQKKVGELKQQFEGKTVLLGVDDMDIFKG 275

Query: 63  IPQKILAFEEFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLT 122
           I  K+LA E+ L+++ +W+ K VL+QIA P R    + +++ +++ E   RIN  FG   
Sbjct: 276 INLKLLAMEQLLQQHSKWQGKAVLVQIANPARGKGADLEEIQAEIRESCRRINEEFGEPG 335

Query: 123 AVPI 126
             PI
Sbjct: 336 YEPI 339


>GSVIVT01007789001 assembled CDS
          Length = 717

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 67/117 (57%)

Query: 3   GVEDQGKLTRVAAFPIGIDSERFIRALELPQVQDHMEELKERFAGRKVILGVDRLDTIKG 62
           G+E  G+   V   P+GI   +   AL LP     ++E++E+F G+K+ILGVD +D  KG
Sbjct: 213 GLEYFGRTVYVKILPVGIHMGQLESALNLPSTSIKVKEIQEQFKGKKIILGVDDMDIFKG 272

Query: 63  IPQKILAFEEFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFG 119
           +  K+LA E  L+   E R ++VL+QI  P R+   + Q+   + + I  RIN  FG
Sbjct: 273 LSLKLLAMEHLLQHYEELRGELVLVQIVNPARSTGKDVQEAKRETYAITERINANFG 329


>GSVIVT01011634001 assembled CDS
          Length = 702

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 3   GVEDQGKLTRVAAFPIGIDSERFIRALELPQVQDHMEELKERFAG--RKVILGVDRLDTI 60
           G+E  G+   +   P+GI   +    L LP+ ++ + EL ++F    R ++LGVD +D  
Sbjct: 244 GLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEEKVAELIKQFCDQDRIMLLGVDDMDIF 303

Query: 61  KGIPQKILAFEEFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFG 119
           KGI  K+LA E+ L ++PEW+ KVVL+QIA P R    + +++ ++    V RIN  FG
Sbjct: 304 KGISLKLLAMEQLLVQHPEWQGKVVLVQIANPARGRGKDVKEVQTETFSTVKRINETFG 362


>GSVIVT01020215001 assembled CDS
          Length = 643

 Score = 82.0 bits (201), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 70/124 (56%)

Query: 3   GVEDQGKLTRVAAFPIGIDSERFIRALELPQVQDHMEELKERFAGRKVILGVDRLDTIKG 62
           G++  G+   +   P+G+   R    L L      ++E++++F G+K+ILGVD +D  KG
Sbjct: 209 GLDYSGRTVYIKILPVGVHMGRLESVLNLHSTSAKIKEIQKQFEGKKLILGVDDMDIFKG 268

Query: 63  IPQKILAFEEFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLT 122
           I  K LA E+ L+++PE + K+VL+QI  P R+   + Q+   + +    RIN  +G+  
Sbjct: 269 ISLKFLAVEQLLQQHPELQGKLVLVQIVNPARSTGKDVQEAKRETYLTAERINETYGSPN 328

Query: 123 AVPI 126
             P+
Sbjct: 329 YEPV 332


>GSVIVT01021260001 assembled CDS
          Length = 784

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 68/124 (54%)

Query: 3   GVEDQGKLTRVAAFPIGIDSERFIRALELPQVQDHMEELKERFAGRKVILGVDRLDTIKG 62
           G+E  G+   +   P+G+   +    L     +  + ELK++F G+ V+LGVD +D  KG
Sbjct: 219 GLEYYGRTVGIKIMPVGVHMGQIESVLRFADKEWRVGELKQQFEGKTVLLGVDDMDIFKG 278

Query: 63  IPQKILAFEEFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLT 122
           +  K+LA E+ L ++P+W+ + VL+QIA P R    + + + +++     RIN  FG   
Sbjct: 279 VNLKLLAMEQMLTQHPKWQGRAVLVQIANPARGSGRDLEVIQAEIQASCKRINENFGQPG 338

Query: 123 AVPI 126
             PI
Sbjct: 339 YEPI 342


>GSVIVT01021313001 assembled CDS
          Length = 487

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/29 (96%), Positives = 28/29 (96%)

Query: 101 QKLTSQVHEIVGRINGRFGTLTAVPIHHL 129
           QKLTSQVHEIVGRINGRFGTLT VPIHHL
Sbjct: 19  QKLTSQVHEIVGRINGRFGTLTTVPIHHL 47


>GSVIVT01031857001 assembled CDS
          Length = 577

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 65  QKILAFEEFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAV 124
           +K+LA E+ L+++ +W+ K VL+QIA P R    + +++ +++ E   RIN  FG     
Sbjct: 299 KKLLAMEQLLQQHSKWQGKTVLVQIANPARGKGADLEEIQAEIRESCRRINEEFGEPGYE 358

Query: 125 PI 126
           PI
Sbjct: 359 PI 360