Jatropha Genome Database

JcCB0453831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453831.10 - phase: 2 /partial
         (212 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033378001 assembled CDS                                        84   4e-17
GSVIVT01012840001 assembled CDS                                        69   2e-12
GSVIVT01016106001 assembled CDS                                        49   3e-06

>GSVIVT01033378001 assembled CDS
          Length = 364

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 73/149 (48%), Gaps = 17/149 (11%)

Query: 8   ATSHRE--RWS--------FDTESWGLNHEKTRXXXXXXXXXXVDFQTCGICSKLLTEKS 57
           A+S RE  RWS        FD E++ +  E             V  Q CGIC KLL +KS
Sbjct: 148 ASSRREGFRWSSASSFDMGFDGETFDMA-EHMDVESQRSPVCPVGDQRCGICGKLLWQKS 206

Query: 58  LWSSQKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPSCPVC--TLGEKQTHKLS 115
            WSS +++  +++ +  +L C HV+HAECLE +TP    +DP CP+C  T+G  +     
Sbjct: 207 PWSSHRIMRGSDMPIAGILPCSHVFHAECLEQMTPKAQIHDPPCPMCLKTIGTLE----E 262

Query: 116 QKAFKAELDLKAKNKRSRNRVVDSDLDGD 144
             A    L +  +  R    VV S   G+
Sbjct: 263 SPAVSEPLQMALRTVRRSRGVVISGGQGN 291


>GSVIVT01012840001 assembled CDS
          Length = 246

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 45  TCGICSKLLTEKSLWSSQKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPSCPVC 104
            CGIC + L  K  +  + ++ S+ELSVVAVL CGHVYHA+CLE  T   ++ DP CP+C
Sbjct: 174 VCGICQRPLRRKP-YCLENVLSSSELSVVAVLVCGHVYHADCLEQRTCHEDRQDPPCPLC 232

Query: 105 T 105
            
Sbjct: 233 V 233


>GSVIVT01016106001 assembled CDS
          Length = 744

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 73  VAVLTCGHVYHAECLETLTPDINKYDPSCPVCTLGE 108
           VAVL CGH++H  CL+ +TP     DP C  C +GE
Sbjct: 708 VAVLPCGHIFHDHCLQLITPKDQSKDPPCIPCAIGE 743