Jatropha Genome Database

JcCB0453321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453321.10 - phase: 0 /partial
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027931001 assembled CDS                                       245   5e-66

>GSVIVT01027931001 assembled CDS
          Length = 1114

 Score =  245 bits (626), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 118/145 (81%), Positives = 130/145 (89%), Gaps = 6/145 (4%)

Query: 6   MQVTEDFIPIISRIKASMAPLGGPKGEVSYAREHESVWFKGKRFAPAVWAGTPGEEQIKQ 65
           + ++EDF+PIISRIKA+ APLGGPKGEV YAREHE+VWFKGKRFAP  WAGTPGEEQIKQ
Sbjct: 570 LAISEDFLPIISRIKATTAPLGGPKGEVVYAREHEAVWFKGKRFAPVAWAGTPGEEQIKQ 629

Query: 66  LKPAVDSKGRKVGEEWFTTIKVEDALMRYHAAIDKAKARVLELLRGLSAELQSRINILIF 125
           L+PA+DSKGRKVG EWFTT+KVEDAL RYH A DKAKARVLELLRGLSAELQ++INILIF
Sbjct: 630 LRPAIDSKGRKVGLEWFTTVKVEDALTRYHEAGDKAKARVLELLRGLSAELQTKINILIF 689

Query: 126 ASMLLVIAKALFAHV------RWVF 144
           ASMLLVIAKALFAHV      +WVF
Sbjct: 690 ASMLLVIAKALFAHVSEGRRRKWVF 714