Jatropha Genome Database

JcCB0453091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453091.20 - phase: 0 /partial
         (61 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032697001 assembled CDS                                        90   2e-19
GSVIVT01035159001 assembled CDS                                        89   6e-19
GSVIVT01022677001 assembled CDS                                        84   1e-17
GSVIVT01035137001 assembled CDS                                        84   2e-17
GSVIVT01027259001 assembled CDS                                        84   2e-17
GSVIVT01020332001 assembled CDS                                        84   2e-17

>GSVIVT01032697001 assembled CDS
          Length = 338

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/53 (77%), Positives = 48/53 (90%)

Query: 1   MASRGKINSPSLKTMMSTLVKKGYAATRSHIASNAIKTDCPMSMCIRIAKELQ 53
           +ASR KINSP L+TMMS L K+GYA +RSHIASNAIKT+CPM++CIRIAKELQ
Sbjct: 284 VASRAKINSPPLRTMMSALNKEGYAVSRSHIASNAIKTNCPMAVCIRIAKELQ 336


>GSVIVT01035159001 assembled CDS
          Length = 98

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 48/53 (90%)

Query: 1  MASRGKINSPSLKTMMSTLVKKGYAATRSHIASNAIKTDCPMSMCIRIAKELQ 53
          +ASR KINSP L+TMMS L K+GYA +RSHIASNAIKT+CPM++CIRIAKELQ
Sbjct: 44 VASRAKINSPPLRTMMSALNKEGYAVSRSHIASNAIKTNCPMAVCIRIAKELQ 96


>GSVIVT01022677001 assembled CDS
          Length = 122

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 46/53 (86%)

Query: 1   MASRGKINSPSLKTMMSTLVKKGYAATRSHIASNAIKTDCPMSMCIRIAKELQ 53
           +A   KINSP L+TMMS L K+GYA +RSHIASNAIKT+CPM++CIRIAKELQ
Sbjct: 68  VARHAKINSPPLRTMMSALNKEGYAVSRSHIASNAIKTNCPMAVCIRIAKELQ 120


>GSVIVT01035137001 assembled CDS
          Length = 98

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 46/53 (86%)

Query: 1  MASRGKINSPSLKTMMSTLVKKGYAATRSHIASNAIKTDCPMSMCIRIAKELQ 53
          +ASR KINSP L TMMS L K+GYA +RSHIASNAIKT+CPM++ IRIAKELQ
Sbjct: 44 VASRAKINSPPLMTMMSALNKEGYAVSRSHIASNAIKTNCPMAVSIRIAKELQ 96


>GSVIVT01027259001 assembled CDS
          Length = 98

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 46/53 (86%)

Query: 1  MASRGKINSPSLKTMMSTLVKKGYAATRSHIASNAIKTDCPMSMCIRIAKELQ 53
          +ASR KINSP L TMMS L K+GYA +RSHIASNAIKT+CPM++ IRIAKELQ
Sbjct: 44 VASRAKINSPPLMTMMSALNKEGYAVSRSHIASNAIKTNCPMAVSIRIAKELQ 96


>GSVIVT01020332001 assembled CDS
          Length = 98

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 46/53 (86%)

Query: 1  MASRGKINSPSLKTMMSTLVKKGYAATRSHIASNAIKTDCPMSMCIRIAKELQ 53
          +ASR KINSP L TMMS L K+GYA +RSHIASNAIKT+CPM++ IRIAKELQ
Sbjct: 44 VASRAKINSPPLMTMMSALNKEGYAVSRSHIASNAIKTNCPMAVSIRIAKELQ 96