Jatropha Genome Database

JcCB0453091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453091.10 + phase: 0 
         (60 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032675001 assembled CDS                                       112   2e-26
GSVIVT01024575001 assembled CDS                                       101   5e-23
GSVIVT01013850001 assembled CDS                                        47   2e-06

>GSVIVT01032675001 assembled CDS
          Length = 154

 Score =  112 bits (281), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/57 (89%), Positives = 53/57 (92%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYANECP 58
            DPLVTKGP LVPLLGIDVWEHAYYLQYKNVRPDYLKN+WKVI+WKYASEVY  ECP
Sbjct: 98  QDPLVTKGPNLVPLLGIDVWEHAYYLQYKNVRPDYLKNVWKVIDWKYASEVYEKECP 154


>GSVIVT01024575001 assembled CDS
          Length = 228

 Score =  101 bits (252), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 49/55 (89%)

Query: 3   DPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYANEC 57
           DPLVTKGP LVPLLGIDVWEHAY LQYKNV+ DYLKNIWKV+NWKYASE+Y  E 
Sbjct: 173 DPLVTKGPNLVPLLGIDVWEHAYNLQYKNVKADYLKNIWKVMNWKYASELYEKES 227


>GSVIVT01013850001 assembled CDS
          Length = 306

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 29/38 (76%), Gaps = 1/38 (2%)

Query: 14  PLLGIDVWEHAYYLQYKNVRPDYLK-NIWKVINWKYAS 50
           PLL IDVWEHAYYL ++N RPDY+   + K+++W+  S
Sbjct: 218 PLLTIDVWEHAYYLDFQNHRPDYISIFMEKLVSWEAVS 255