Jatropha Genome Database

JcCB0452011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0452011.10 + phase: 2 /pseudo/partial
         (256 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009652001 assembled CDS                                       299   1e-81

>GSVIVT01009652001 assembled CDS
          Length = 425

 Score =  299 bits (765), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 136/163 (83%), Positives = 152/163 (93%)

Query: 58  RILPVFNNLVVNETCDDVEAEFLNGKYVLPRQSCFYMSDLGQIRNLIPDESDCGFNLIVV 117
           R++P+FNNLVVNET D+VEAEFLN +YV+PR+SCFYMSDL QI NLIP ESDCGF+LIVV
Sbjct: 180 RVIPIFNNLVVNETSDNVEAEFLNSRYVIPRESCFYMSDLRQIHNLIPAESDCGFSLIVV 239

Query: 118 DPPWENASASQKLLYPTLPNRYFLSLPIKQLTHTDGALVALWVTNREKLRDFVEKELFPT 177
           DPPWEN SASQKL+Y TLPNRYFLSLPIK+LTHT+GAL+ALWVTNREKLR FVEKELFP 
Sbjct: 240 DPPWENKSASQKLVYSTLPNRYFLSLPIKKLTHTEGALIALWVTNREKLRGFVEKELFPA 299

Query: 178 WGVNYAASFYWLKVKADGSLITDLDLFHHRPYECLLLGYCRRE 220
           WGV+YAA+FYWLKVK+DGSLI+DLDLFHHRPYECLLLGYC  E
Sbjct: 300 WGVSYAATFYWLKVKSDGSLISDLDLFHHRPYECLLLGYCHGE 342