Jatropha Genome Database

JcCB0451941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0451941.10 - phase: 2 /partial
         (82 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035952001 assembled CDS                                       101   8e-23
GSVIVT01019479001 assembled CDS                                        68   9e-13
GSVIVT01030428001 assembled CDS                                        65   5e-12
GSVIVT01037664001 assembled CDS                                        65   9e-12
GSVIVT01028724001 assembled CDS                                        64   1e-11
GSVIVT01012721001 assembled CDS                                        64   2e-11
GSVIVT01037121001 assembled CDS                                        60   3e-10
GSVIVT01022413001 assembled CDS                                        59   5e-10
GSVIVT01019685001 assembled CDS                                        58   8e-10
GSVIVT01008948001 assembled CDS                                        58   1e-09

>GSVIVT01035952001 assembled CDS
          Length = 339

 Score =  101 bits (251), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 53/57 (92%)

Query: 20  ALLILSKNLAQYININSASLKTYAHDDISIGSWMMGLQATYIDDNRLCCSSIKQGEL 76
           +L+ILSKNL QY+NINSASL TYAHDDIS+GSWMMG+QATYIDDNRLCCSS +Q ++
Sbjct: 279 SLIILSKNLVQYVNINSASLMTYAHDDISVGSWMMGIQATYIDDNRLCCSSSRQDKV 335


>GSVIVT01019479001 assembled CDS
          Length = 341

 Score = 67.8 bits (164), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 21  LLILSKNLAQYININSASLKTYAHDDISIGSWMMGLQATYIDDNRLCCSSIKQGELAA 78
           + ++S+ LAQ+I+IN + L +YAHDD++ GSW +GL   YIDD + CCSS   G + A
Sbjct: 282 IYVISQALAQFISINRSILLSYAHDDVTTGSWFIGLDVKYIDDTKFCCSSWASGAICA 339


>GSVIVT01030428001 assembled CDS
          Length = 407

 Score = 65.5 bits (158), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 38/50 (76%)

Query: 21  LLILSKNLAQYININSASLKTYAHDDISIGSWMMGLQATYIDDNRLCCSS 70
           L  +SK+LA+YI+IN   L  YA++D+S+GSW +GL A +IDD RLCC +
Sbjct: 307 LYAISKDLARYISINQHVLHKYANEDVSLGSWFIGLDAEHIDDRRLCCGT 356


>GSVIVT01037664001 assembled CDS
          Length = 405

 Score = 64.7 bits (156), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 21  LLILSKNLAQYININSASLKTYAHDDISIGSWMMGLQATYIDDNRLCCSS 70
           L  +SK+LA YI+IN   L  YA++D+S+GSW +GL A +IDD RLCC +
Sbjct: 305 LYAISKDLATYISINQHVLHKYANEDVSLGSWFIGLDAEHIDDRRLCCGT 354


>GSVIVT01028724001 assembled CDS
          Length = 342

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 41/58 (70%)

Query: 21  LLILSKNLAQYININSASLKTYAHDDISIGSWMMGLQATYIDDNRLCCSSIKQGELAA 78
           + ++S+ LA++I+IN + ++TYAHDD S+GSW +GL   Y+ + + CCSS   G + +
Sbjct: 283 MYVISRGLAKFISINRSLIRTYAHDDASVGSWFIGLNVEYVHEPKFCCSSWTSGAICS 340


>GSVIVT01012721001 assembled CDS
          Length = 408

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query: 21  LLILSKNLAQYININSASLKTYAHDDISIGSWMMGLQATYIDDNRLCCSS 70
           L  +SKNLA YI+IN   L  YA++D+S+GSW +GL   +IDD RLCC +
Sbjct: 308 LYAISKNLATYISINRHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGT 357


>GSVIVT01037121001 assembled CDS
          Length = 390

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 36/47 (76%)

Query: 24  LSKNLAQYININSASLKTYAHDDISIGSWMMGLQATYIDDNRLCCSS 70
           +SK+LA YI+IN+  L  YA++D+S+GSW +GL+  ++DD  +CC +
Sbjct: 293 ISKDLAAYISINAPILHRYANEDVSLGSWFIGLEVEHVDDRMMCCGT 339


>GSVIVT01022413001 assembled CDS
          Length = 397

 Score = 58.5 bits (140), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 35/47 (74%)

Query: 24  LSKNLAQYININSASLKTYAHDDISIGSWMMGLQATYIDDNRLCCSS 70
           +SK+LA YI++N   L  YA++D+S+G+W +GL+  +IDD  LCC +
Sbjct: 300 ISKDLATYISVNQPILHKYANEDVSLGAWFIGLEVEHIDDRNLCCGT 346


>GSVIVT01019685001 assembled CDS
          Length = 405

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 33/47 (70%)

Query: 24  LSKNLAQYININSASLKTYAHDDISIGSWMMGLQATYIDDNRLCCSS 70
           +SK+LA YI++N   L  YA++D+S+GSW +GL   +IDD   CC S
Sbjct: 308 ISKDLATYISVNRHILHRYANEDVSLGSWFIGLDVEHIDDRSFCCGS 354


>GSVIVT01008948001 assembled CDS
          Length = 397

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 35/47 (74%)

Query: 24  LSKNLAQYININSASLKTYAHDDISIGSWMMGLQATYIDDNRLCCSS 70
           +SK+LA YI+IN   L  YA++D+S+GSW +GL+  +ID+  +CC +
Sbjct: 299 ISKDLATYISINQPILHKYANEDVSLGSWFIGLEVEHIDERNMCCGT 345