Jatropha Genome Database

JcCB0450851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0450851.10 + phase: 1 /pseudo/partial
         (155 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027931001 assembled CDS                                       185   7e-48

>GSVIVT01027931001 assembled CDS
          Length = 1114

 Score =  185 bits (470), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 103/121 (85%)

Query: 21  REANHIEFCRIKNVLDEILHMHRNLELTEILKSLMDPTWVATGLKIDFETLVNECEWASD 80
           REANHIEFCRIK+VLDEIL MHRN +L +ILK LMDPTWVATGLKIDF+TLVNECEW S 
Sbjct: 452 REANHIEFCRIKSVLDEILQMHRNSDLNKILKLLMDPTWVATGLKIDFDTLVNECEWISA 511

Query: 81  RICEMIYLEDKIDRKSDSHSVVPSEFFEDMELSWRGRVKRIHIEEEFAEVESAAQALSSA 140
           RI +MI+L+ + D+K   H ++P++FFEDME  W+GRVKRIH+EE FAEVE AA+ALS A
Sbjct: 512 RIGKMIFLDGENDQKISYHPIIPNDFFEDMESPWKGRVKRIHVEEAFAEVERAAEALSLA 571

Query: 141 V 141
           +
Sbjct: 572 I 572