Jatropha Genome Database

JcCB0450571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0450571.10 - phase: 2 /partial
         (381 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034521001 assembled CDS                                       209   1e-54
GSVIVT01033746001 assembled CDS                                       194   7e-50
GSVIVT01025297001 assembled CDS                                       164   5e-41

>GSVIVT01034521001 assembled CDS
          Length = 361

 Score =  209 bits (533), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/298 (42%), Positives = 168/298 (56%), Gaps = 36/298 (12%)

Query: 63  ACVGDDGPFEGVEGLKRKSGILQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNKRYKR 122
           A  G + P  G +G  RK  ILQKKGKWK+VSK+M  +G +VSPQQCEDKFNDLNKRYKR
Sbjct: 92  AIDGHNDPNRGKKG--RKYAILQKKGKWKSVSKVMAERGHYVSPQQCEDKFNDLNKRYKR 149

Query: 123 LNEILGRGTSCRVVENPALMDSM-PLSDKAKDDVRKILSSKHLFYKEMCAYHNGQRIPNC 181
           LN++LGRGTSC+VVENPAL+D M  L++K K+DVRKILSSKHLFY+EMC+YHNG R+   
Sbjct: 150 LNDVLGRGTSCQVVENPALLDMMDHLTEKTKEDVRKILSSKHLFYEEMCSYHNGNRLHLP 209

Query: 182 QDLDLQGCLSPLERCSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVRM----- 236
            D  LQ  L    R                                     V RM     
Sbjct: 210 PDPALQRSLQLALRS------------------------RDEHDNRVYGMPVKRMKQGQN 245

Query: 237 -DKYSERNKVNEEDARLWSQSGGLIGFEVEMAAIFQDPAVSLWEKKEWIKKQKLQLLEQR 295
            + +S  N  N +D    ++S       V+M  ++   +     +K+W++ + LQL EQ+
Sbjct: 246 QEDFSFGNPSNSQDC---NRSPHPQSAHVDMNQVYPVGSAEDLLQKQWMRSRSLQLEEQK 302

Query: 296 VSIQSQAFELEKQRFKWLRYCSKKDREFETSXXXXXXXXXXXXQSILQLRQKQLGMDF 353
           + IQ Q  ELEKQRFKW R+C KKDR+ +              +  L+L++K++G  +
Sbjct: 303 LQIQEQMLELEKQRFKWQRFCRKKDRDLDKLRMENERMKLENERMALELKRKEMGASY 360


>GSVIVT01033746001 assembled CDS
          Length = 410

 Score =  194 bits (492), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 123/160 (76%), Gaps = 7/160 (4%)

Query: 18  SEDDEPSFMEDGNGESSSAAKGKNGSTWQRMKWTDNIVRLLIAIVACVGDDGPFEGVE-- 75
           S++DEP       G+ S+A   +  S W RMKWTDN+VRLLI  V  +GD+G  E  +  
Sbjct: 70  SDEDEPGL----TGDDSTADGKRKVSPWHRMKWTDNMVRLLIMAVFYIGDEGGSECSDPS 125

Query: 76  GLKRKSGILQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTSCRV 135
             K+  G+LQKKGKWK+VS+ M+ KG +VSPQQCEDKFNDLNKRYKR+N+ILG+GT+CRV
Sbjct: 126 AKKKTGGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRV 185

Query: 136 VENPALMDSM-PLSDKAKDDVRKILSSKHLFYKEMCAYHN 174
           VEN +L+D+M  LS K KD+VRK+L+SKHLF++EMCAYHN
Sbjct: 186 VENQSLLDTMDQLSPKMKDEVRKLLNSKHLFFREMCAYHN 225



 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 53/86 (61%)

Query: 265 EMAAIFQDPAVSLWEKKEWIKKQKLQLLEQRVSIQSQAFELEKQRFKWLRYCSKKDREFE 324
           E+ ++ QD   S  EKK+W++ + +QL EQRVS Q +AFELEKQR KW+++ SKK+RE E
Sbjct: 275 EVMSVLQDGTKSTLEKKQWMRSRMMQLEEQRVSYQCKAFELEKQRLKWVKFSSKKEREME 334

Query: 325 TSXXXXXXXXXXXXQSILQLRQKQLG 350
                         +  L LRQK+ G
Sbjct: 335 REKLVNQRKRLENERMALLLRQKEHG 360


>GSVIVT01025297001 assembled CDS
          Length = 205

 Score =  164 bits (416), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 118/213 (55%), Gaps = 25/213 (11%)

Query: 169 MCAYHNGQRIPNCQDLDLQGCLSPLERCSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 228
           MCAYHNG+ I NC D+DLQG  SPL R SK                              
Sbjct: 1   MCAYHNGKSISNCHDVDLQGYFSPLARSSKDNNGSEEEEAEENEDF-------------- 46

Query: 229 XXXXVVRMDKYSERNKVNEEDARLWSQSGGLIGFEVEMAAIFQDPAVSLWEKKEWIKKQK 288
                     + + +    ++A   +QS G  GFEVEMA IF+DPA S WE+KEWIK + 
Sbjct: 47  ---------DFDDLDNEEYDNADGHAQSMG--GFEVEMAGIFEDPAKSPWEQKEWIKNRM 95

Query: 289 LQLLEQRVSIQSQAFELEKQRFKWLRYCSKKDREFETSXXXXXXXXXXXXQSILQLRQKQ 348
           LQL EQ V+I +Q FELEKQRFKWLR+ SKK R+ E S            + +L+L+QK+
Sbjct: 96  LQLQEQMVTIMAQGFELEKQRFKWLRFSSKKGRDLEDSRLENERMGLENERLVLELKQKE 155

Query: 349 LGMDFRSSETSREPTSLGIDRLQGRDQIDLGRH 381
           L +D +  E S +P S  ID LQGRDQI+LGRH
Sbjct: 156 LELDLKGPEASLDPASFCIDGLQGRDQIELGRH 188