Jatropha Genome Database

JcCB0449991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0449991.10 + phase: 0 /partial
         (233 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014322001 assembled CDS                                        87   9e-18

>GSVIVT01014322001 assembled CDS
          Length = 402

 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 110/265 (41%), Gaps = 38/265 (14%)

Query: 4   FDLDKTSANEIDNWLHFALSRRVQRLEFNF--------DSK----VIPEVSRCYTLSMAH 51
           FDL K S ++ID W  FA+S+ V+ LEF+F        D      ++      Y      
Sbjct: 119 FDLSKRSRSDIDKWFEFAMSKNVKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRI 178

Query: 52  AGSS----------CIKSLTSVSLTNVDVTAEVLEHFLSNCPNXXXXXXXXXXXXXXXKV 101
            G              KSL ++SL +++V++E +E+FLSNCP                +V
Sbjct: 179 LGVREARDPNGMFVGFKSLKTLSLKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRV 238

Query: 102 AGPSPFRLKHLEIQYCQDFGQLEICAPNLVYFGYLGRKM------RLHIVHAPSLIHVYL 155
           AGPS   L+HLEI  C     +EIC  NLV F Y G +        +HI ++P L+ V  
Sbjct: 239 AGPS-IMLRHLEIVKCSSIQTIEICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLA 297

Query: 156 SYYCLDSPTFVXXXXXXXXXXXXXXXX-------DFSTILQMPNIPELTNLKHLVIGGCA 208
               L     +                       + S    +P +  L  LK  V  GC 
Sbjct: 298 GVGRLGFAKNMLLKLSSCVHQLQILQLTVDHFFPERSRAYLLPKLRNLKQLKLTVFVGCP 357

Query: 209 DSHDSLLWIDPLLKACPSLQKLSLR 233
           +  + LL    +LK CP L+ L L+
Sbjct: 358 E--NCLLGFVAMLKKCPHLESLVLQ 380