Jatropha Genome Database

JcCB0449231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0449231.10 + phase: 1 /partial
         (156 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010734001 assembled CDS                                       230   2e-61

>GSVIVT01010734001 assembled CDS
          Length = 381

 Score =  230 bits (587), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/158 (72%), Positives = 129/158 (81%), Gaps = 10/158 (6%)

Query: 9   QELTMNACKP--LNMSEKQE-------LMSVQPTHPESVPINALVSVKGTPLQDQKPVEI 59
           +E  +N C    + + E +E        ++  PTHPESVPINAL++VKGTPL+DQKPVEI
Sbjct: 224 REAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLEDQKPVEI 283

Query: 60  WEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDV 119
           WEM+RMIATARIVMPKAMVRLSAGRVRFS+PEQALCFLAGANSIFTG+KLLTTPNNDFD 
Sbjct: 284 WEMVRMIATARIVMPKAMVRLSAGRVRFSVPEQALCFLAGANSIFTGDKLLTTPNNDFDA 343

Query: 120 DQQMFKVLGLIPKAPSFSEDEEIAFESENC-QAVSSSG 156
           DQQMFK+LGLIPKAPSF ED     E+ENC QAVS SG
Sbjct: 344 DQQMFKLLGLIPKAPSFDEDVAKTSEAENCEQAVSGSG 381