Jatropha Genome Database

JcCB0447941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0447941.10 - phase: 0 /partial
         (94 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012140001 assembled CDS                                       105   3e-24

>GSVIVT01012140001 assembled CDS
          Length = 478

 Score =  105 bits (263), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 55/65 (84%)

Query: 1   GVTVQESLKEKSIGITEESLLQLKYDPRSVWGYIEVHIEQGPVLEWAGFPLGVVKGIAGQ 60
           GVTVQ +L + SI  TEE+L QLKYDP+SVWGY+EVHIEQGPVLE  G PL VVKGIAGQ
Sbjct: 198 GVTVQNALMDNSIEATEETLSQLKYDPKSVWGYVEVHIEQGPVLEGIGLPLAVVKGIAGQ 257

Query: 61  TRLKV 65
           TRLKV
Sbjct: 258 TRLKV 262