Jatropha Genome Database

JcCB0446791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0446791.10 + phase: 0 /partial
         (127 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011700001 assembled CDS                                       229   3e-61
GSVIVT01018452001 assembled CDS                                       129   3e-31

>GSVIVT01011700001 assembled CDS
          Length = 583

 Score =  229 bits (584), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 111/128 (86%), Positives = 121/128 (94%), Gaps = 1/128 (0%)

Query: 1   MSAANGVRRVWVGQNGLLSTPAVSAVIRERVGVDGSKATGAFILTASHNPGGPHEDFGIK 60
           M+AANGVR VWVGQNGLLSTPAVSAVIRERVG DG+KA+GAFILTASHNPGGP+EDFGIK
Sbjct: 78  MAAANGVRSVWVGQNGLLSTPAVSAVIRERVGKDGTKASGAFILTASHNPGGPNEDFGIK 137

Query: 61  YNMENGGPAPEGITDKIYENTKTIKEYLIA-DLPNVDISAIGVSNFSGPEGPFDVEVFDS 119
           YNMENGGPA E ITDKIYENTK+IKEY+IA DLP+VDISAIG++NF+GPEG FDVEVFDS
Sbjct: 138 YNMENGGPAQEAITDKIYENTKSIKEYIIAEDLPDVDISAIGITNFTGPEGQFDVEVFDS 197

Query: 120 ASDYVKLM 127
           A DYVKLM
Sbjct: 198 AFDYVKLM 205


>GSVIVT01018452001 assembled CDS
          Length = 614

 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 89/123 (72%), Gaps = 10/123 (8%)

Query: 5   NGVRRVWVGQNGLLSTPAVSAVIRERVGVDGSKATGAFILTASHNPGGPHEDFGIKYNME 64
           NGV ++ VG+ G++STPAVSAVIR++      KA G FI++ASHNPGGP  D+GIK+N  
Sbjct: 136 NGVGKILVGKEGIMSTPAVSAVIRKQ------KANGGFIMSASHNPGGPEYDWGIKFNYS 189

Query: 65  NGGPAPEGITDKIYENTKTIKEYLIADLPNVDISAIGVSNFSGPEGPFDVEVFDSASDYV 124
           +G PAPE ITDKIY NT +I E  + D+P++D+S +GV+ +    G F VEV D  SDY+
Sbjct: 190 SGQPAPETITDKIYGNTLSISEIKMVDIPDIDLSCLGVTTY----GNFSVEVVDPVSDYL 245

Query: 125 KLM 127
           +L+
Sbjct: 246 ELL 248