Jatropha Genome Database

JcCB0444931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0444931.10 + phase: 0 
         (75 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026824001 assembled CDS                                       124   6e-30
GSVIVT01018377001 assembled CDS                                       114   9e-27
GSVIVT01016997001 assembled CDS                                        92   4e-20
GSVIVT01035291001 assembled CDS                                        90   2e-19
GSVIVT01015311001 assembled CDS                                        88   9e-19
GSVIVT01013039001 assembled CDS                                        86   5e-18

>GSVIVT01026824001 assembled CDS
          Length = 605

 Score =  124 bits (312), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/68 (89%), Positives = 65/68 (95%)

Query: 6   FPTPFVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPVMLDVGTNN 65
           +P   VDMIV+TDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILP+MLDVGTNN
Sbjct: 169 WPAHQVDMIVITDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPIMLDVGTNN 228

Query: 66  QKLLEDRL 73
           Q+LLEDRL
Sbjct: 229 QRLLEDRL 236


>GSVIVT01018377001 assembled CDS
          Length = 625

 Score =  114 bits (285), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 55/66 (83%), Positives = 62/66 (93%)

Query: 6   FPTPFVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPVMLDVGTNN 65
           +P   VDMIV+TDGSRILGLGDLGVQGIGI IGKLD+YVAAAGINPQR+LPVM+DVGTNN
Sbjct: 183 WPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTNN 242

Query: 66  QKLLED 71
           +KLL+D
Sbjct: 243 EKLLKD 248


>GSVIVT01016997001 assembled CDS
          Length = 640

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 51/68 (75%)

Query: 6   FPTPFVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPVMLDVGTNN 65
           +P   + +IV+TDG RILGLGDLG QG+GIP+GKL +Y A  G+ P   LPV +DVGTNN
Sbjct: 226 WPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNN 285

Query: 66  QKLLEDRL 73
           QKLL+D  
Sbjct: 286 QKLLDDEF 293


>GSVIVT01035291001 assembled CDS
          Length = 575

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query: 6   FPTPFVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPVMLDVGTNN 65
           +P   + +IV+TDG RILGLGDLG QG+GIP+GKL +Y A  G+ P   LPV +DVGTNN
Sbjct: 161 WPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPVTIDVGTNN 220

Query: 66  QKLLEDRL 73
           ++LL+D  
Sbjct: 221 EQLLKDEF 228


>GSVIVT01015311001 assembled CDS
          Length = 591

 Score = 87.8 bits (216), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 50/68 (73%)

Query: 6   FPTPFVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPVMLDVGTNN 65
           +P   + +IV+TDG RILGLGDLG QG+GIP+GKL +Y A  G+ P   LP+ +DVGTNN
Sbjct: 177 WPERRIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNN 236

Query: 66  QKLLEDRL 73
           +KLL +  
Sbjct: 237 EKLLANEF 244


>GSVIVT01013039001 assembled CDS
          Length = 432

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 51/68 (75%)

Query: 6   FPTPFVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPVMLDVGTNN 65
           +P   + +IV+T+G RILGLGDLG QG+GIP+GKL +Y    G++P   LPV +DVGTNN
Sbjct: 167 WPERSIQVIVVTNGERILGLGDLGCQGMGIPVGKLSLYTTLGGLHPSVCLPVTIDVGTNN 226

Query: 66  QKLLEDRL 73
           ++LL+D  
Sbjct: 227 EQLLKDEF 234